Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01989 ATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCTTCGCCGTCCCTCGCCGAGGCAGAGAACTTCGCCGGCGGGCCCTTCCGATCCAACGTTCGCTCCTTCCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCCCACCTGTTGACGTGGCAGATACTCTTCCGCGTCGGCGAGCTCACCGAAGGCCCTGACTCGCCTGTTGTGTGCCTGGACGTTGTGCAAGAAGACGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTTGGTTGGAGCGGCCATCCAGTGTGCGGAAAGCGTTACCATTTTATAATCAAAGCCGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCTAAATGCAAGTCTTGCAACCACGTGACTACCACTGATGATGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACACGGCGTAGTCCATGGCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTGAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTATCGCTTGCTGCATGCCATTATGAAGGGACACCCATGGTATGGCGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCCAACCTACCCTTGTCCACCTTTTCCCAGGGACAGATGCCGATACCCCATTCCCGTGTTCAGGACATGATAAAATATATCCAGTCTTTGTCAGAGCATGAACTTGTAAATATAAGAGACCTCTTTTGTTTTATAATAGGTTTGATTGGTGACGTTCGTAAGAGTGTATCAAATGTGGATGACACAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGACTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTGAACTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTAGGCTCTCCAGAACTGCTTGATTATTGCCTGGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATACTCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCCACTGGTGCTTGCTATGGAATTCTAGCGAACAATAATAACTCCTCAGCCTCGAAGTATCCATCTGAAGAAAACCTCCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGTTGAAGCAGGGACAAGGACTCTTGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGTTGTTGCCTTTGTCAGATTTGCACAAGTTACGCATCTCATGTCAGGTTGAACTCGTAGATGAATCTGAAGATCCAGAAGTCATTGCCCCACCGGAATTAATAGTGCTGCCCATGAATGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTAGAAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTACGAGGAAGATGCATTGGGAAGAATGGGTTAAGTAAGTTCCGGATGGAACGAGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCGAAGGATGACGATGGGGAGAGAATGTTGGCTTGCGATATATGTGGAGTGTGGCGGCATACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTGAAATGCCAAACCTCTGAATCAAAACTCAAATCTGGGGGGCACTGCAAAGATGAGACTGTCACTAACGTTAGCACTTCAACTAGTTGTTTCGGAAAAGCCTTCCCAGTGCCATCAGATGTCAGTTAG 2139 0.4783 MVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVQEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVENLSNLPLSTFSQGQMPIPHSRVQDMIKYIQSLSEHELVNIRDLFCFIIGLIGDVRKSVSNVDDTTCKKRRFNASGLSISWEKTDIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNTQTGVYEFRLEAATGACYGILANNNNSSASKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVELVDESEDPEVIAPPELIVLPMNATVAELKSQAANAFQDVYLMFRRFQVDELEGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQTSESKLKSGGHCKDETVTNVSTSTSCFGKAFPVPSDVS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01989 712 CDD PHD_MMD1_like 628 673 - -
Phco6g01989 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Phco6g01989 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 688 - -
Phco6g01989 712 SMART PHD_3 628 674 IPR001965 -
Phco6g01989 712 Pfam PHD-finger 629 675 IPR019787 -
Phco6g01989 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01989 Phco-Chr6 39503353 39507908 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco6g01989 PHD 1e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01989 6 39503353 39507908 Phco6g01989 6 39503353 39507908 ECH