Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01986 ATGGAGTCAAGCAATTTACATGCTGATAAAAGGGCAGATAAAAAGATAATAAGATACACGGAATGTCCGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGGTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACCCTTGAGGGTCTCAAATGCTCGGCTTGCAATTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATTCCACTCCTCTGATGATTATTCCGGATACTACTCAGATAGGGCCCATTTGGGCTCATTTATCTCCCAACAAAAGTGGTTCAATTAGTCCTTCTGATGTGTCTGATGAGAAGGACTGTGAAGATGGGATGACTAAGGAGGTGGGAGATCCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACCCAAGAACAAAAGGAGAAGATGTTGCTTTTTGCAGAAAGGGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGGTGCAAAAGTTTTGCCAAGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTTTGGATTCACAATAACAAGAACACTTTTGTCAAGAGAAATCCCTCCACTAGCTAG 594 0.431 MESSNLHADKRADKKIIRYTECPKNHAAAIGGNATDGCGEFIADGEEGTLEGLKCSACNCHRNFHRKEIESSDSYSTPLMIIPDTTQIGPIWAHLSPNKSGSISPSDVSDEKDCEDGMTKEVGDPTEKVKKRFRTKFTQEQKEKMLLFAERAGWRIQKLDESVVQKFCQEIGIKRRVLKVWIHNNKNTFVKRNPSTS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01986 197 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Phco6g01986 197 SUPERFAMILY Homeodomain-like 127 189 IPR009057 -
Phco6g01986 197 Gene3D - 116 190 - -
Phco6g01986 197 FunFam Zinc-finger homeodomain protein 2 118 191 - -
Phco6g01986 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 188 - -
Phco6g01986 197 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Phco6g01986 197 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Phco6g01986 197 MobiDBLite consensus disorder prediction 106 126 - -
Phco6g01986 197 MobiDBLite consensus disorder prediction 96 126 - -
Phco6g01986 197 NCBIfam homeobox domain, ZF-HD class 130 187 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01986 Phco-Chr6 39480954 39481547 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco6g01986 ZF-HD_dimer 1.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01986 6 39480954 39481547 Phco6g01986 6 39480954 39481547 ECH