Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01985 ATGGCTTCTATGGCTTCCAGGCGTTTGAGAGCATTCAAGCGGTGGATGCAGTCCAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCCGAAGAGGGAATAGCGGTGAGAGCTTTTTGCCAGTTGAAGGAAGGTGATGTTGTGGCCGAAATGCCAAAAGAAGCTTGCCTCACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGATGTTGGTTTGGATGGTCATTTGGGGCTAGCATTTGCGATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTAACCAAGAGTGCGTGCCAATTGTTTGGACCCTCGATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTAGCACCTTTAAAACTAAACCCAAAATTCTTTGACATAGAACAATACTTTGCAGCGAAAAGTCTTATATCTTCACGATCATTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCAGAGGATGTCCATTTCACTGCTATGTCCTCTAATTATGAATCCGGAAGTGATGTTGATGGTAGTGATAATGATAAGAGCATTGTTAAGGAAGAAGTAGCATTGGATCAAAATCACTCTATGGATATGACTGCATCAATTGGTGCAAATGTTAGTAACTGCATTGGTAGTGATTTGGATAGTTCTTCTGTTAGCGAGGATGATACTTCTATGTTGGAGATGATTATGATAAAAGATGTCGACAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCACAGATATGGATTTACCGAGCAAGATAATTCCTATGATATTGTAAACATAGACATGGAGCTGATACTTCAATGGTGTTCTTCAGCTTTTTCGGACCGCCACAGTAGAGCAAGAGTTTCCCTTTGGAAAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCTGAATATTTTGAGATCTCATTTGATGGAAAACCACAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTACCAAAAGTTAGACCTATCGGTATCAGTTGCTGGGAATTGTCTTGAATCAAATGGTGAAACCACCCATCTTAATGGTAATATGTTTCCTAATGAAGCATTTAATATGAGCAAGGAATCCTTGCTGCCTAAAAGGGTTTGTGATGCCCTGTTGTCAATTGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTTGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAACTAGAGAGAGAAAGCTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATTCTTCAGAAGCTCAGAAATTATGCTTCACAGGCATATAAAGTCAATAAGCATAGTTCACCAAGGAAGAAATTGAAAAGGACAACAAAGAAAATGAGTTGA 1545 0.4071 MASMASRRLRAFKRWMQSKGFQWSDALEFVDTPEEGIAVRAFCQLKEGDVVAEMPKEACLTTKTSGAREIIEDVGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPNQECVPIVWTLDEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDLAPLKLNPKFFDIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYESGSDVDGSDNDKSIVKEEVALDQNHSMDMTASIGANVSNCIGSDLDSSSVSEDDTSMLEMIMIKDVDSGTEVFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELILQWCSSAFSDRHSRARVSLWKRLGYSACGSQDSEYFEISFDGKPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCLESNGETTHLNGNMFPNEAFNMSKESLLPKRVCDALLSIADMRESLYGLNSVEDDIEALERCSLTRERKLYHSLVLRINERKILQKLRNYASQAYKVNKHSSPRKKLKRTTKKMS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01985 514 Gene3D - 310 502 IPR036464 -
Phco6g01985 514 SUPERFAMILY SET domain 267 313 IPR046341 -
Phco6g01985 514 PIRSF RMS1_SET 1 494 IPR011383 GO:0016279|GO:0018026
Phco6g01985 514 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 465 - -
Phco6g01985 514 ProSiteProfiles SET domain profile. 25 294 IPR001214 GO:0005515
Phco6g01985 514 Gene3D set domain protein methyltransferase, domain 1 5 307 - -
Phco6g01985 514 SUPERFAMILY SET domain 6 208 IPR046341 -
Phco6g01985 514 CDD SET_LSMT 26 308 - -
Phco6g01985 514 Pfam SET domain 36 294 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco6g01985 SET 8.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01985 6 39468128 39471117 Phco6g01985 6 39468128 39471117 ECH