Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01939 ATGTTGCTTCCTTCATCGTCTTCTTCCCCCATCTTGTTAGGTTACCGGCACATTGAATTAGCTTCTGTTGATGTGATTTCGAGCTACTTTGCAGTGGAAGTTCAGAGAACCCACAAACTCCACGTCTTTCACTTCATAAGTACTCTTCTTATCAAAGGAAGACAAACCAGAGACATTGTTGCTTATTGCCTTTTGCATGAGGTTATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGCCGAAGACCATGGATTAATTATGGACAATATGAGAATCATTCAGATGAAGACTCTGACTGTGAGCGGCTTGATCAAAATTTTTCCTCAAGAGCTTGTCTTCCTCAGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTATTGCCAGCTGGCGACCAGAAGAGGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGGTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTACATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTCCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACCAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGGGTCTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGATTTTAAGCTCCAATACTTCAGAAAAAATGAGAATGTATCTCATTTGGGTGATAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACGGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAACTAGGTTCTGCTTCACATGAACAGTACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAAATCAGTGATATATCTGGTGTTTTAGTGCCATGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGACTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCCGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGCTTCAACTGCGGTTTCAATTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCTCAATGGGAGCTTAATTTGCTGAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGAAGGCCTTTTGGCAAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCAAGAAGAGAATTCCTCTGCAGTTCTTCACAGGCATTAAAAATGGAGAGTAATTTTGATGCTACTGATGAAAGGGAATGCAACATATGCTTTTTTGATTTACACCTATCTGCATCTGGCTGTCGCTGTTCCCCAGATAGGTATGCTTGCTTGGATCATGCAAAACAGTTTTGTTCATGCTCCTGGGATTCTAGATTTTTCCTCTTTCGCTATGATGTTAGTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCGCTATCATCTTATGTCTCAGCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCCAATTTGTCTCATTCTTCCAGGGCCACTTTGCATACAGAGATGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGATTCAATCAGCTGAAGCTATATCATCTTTGGGTTCAACGAAGGAATTGCTGACATTTATAAGCTCAAAACCTACATCTGACGTACATAATCACAAGATCTGTGTTACTAAAGAAGAATCTGTTATTTGCAGATCAAAGATGAAAACGCCTGGTTGTCAATTGTCTCAGGAGGACACATCATATGCTTTATCTACTCTACCTCAACAAGGAGGTGAGAAAAGTTCACTTTACAGGCATAACAATATTATACTTCTTAGTGATGATGAAGATGACGAGAAGATGTCTAATTCAAATAGAAGGAAGGCACTTTCTTCTATGCCTGTAGGTTCTGGAGATAAGTCAAGGCCATTTAACAACATAGGAAATACGAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAAGGATGCTATCACATTACCCCATGAAAATATGACTTCTGATTCAATTCGGCCTTTGCATGTGAAACAAGAATGTCATGAACACACAGGAACAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATGGGTCTTACAAGTGCAGAATGTACAAAAAATATTTCGGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGCAAGTTTGGAGATTTCTGCTCTGAACCCACAACTTTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAGTTTGGAGGATGTGCAACTTCAAATGTAGCAGACCATGCAAGAACTGTTAATGGGAACTTTTCTTGTGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATATAGAAGCCGTGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTGGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAGTTGTCCAAGTGAGGTCTTCATCCATATGTCAGCTGCGAGATGCTGGGAGCTCGTCAGAGAGAAAGTGAATCAAGAAATTGCAAAGCAACATAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCCCCTGGTAGCCTTGATGGCTTAGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAAGTCGAGTGTGTAGTGAATACTGGGACTCACGGCCATACTCCCGTCCTCTAGGACAGATTTCACAATCATGCCAAAGCAATGTGAGTGGTGGAAATGGTCAAGGGGTTCTCTTGAATAAGCACATTCCCGTTGAAGTTGTTGCAGTATTAAGGAGCCTATGTCAAAAGGCTAATGCAGAAGAATTGAACTCTTTGTACAGCATTCTTAGTGAAAGTAGGCCACAGGCTGACAGGAGCCAAATTGCGCAATTTCTTAAAGAAGAGATTCACAAATCACAACCGCCCTAG 3975 0.4161 MLLPSSSSSPILLGYRHIELASVDVISSYFAVEVQRTHKLHVFHFISTLLIKGRQTRDIVAYCLLHEVMMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMTSCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQYENHSDEDSDCERLDQNFSSRACLPQGVIRGCPDCSNCQKVIASWRPEEARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSTWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTGSCEVERFGFEPGPEFTLETFQRYAEDFKLQYFRKNENVSHLGDNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEQYIKSGWNLNNFARLPGSLLSYEISDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEETMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKEGLLAKALKMRVEMERARREFLCSSSQALKMESNFDATDERECNICFFDLHLSASGCRCSPDRYACLDHAKQFCSCSWDSRFFLFRYDVSELNILVEALEGKLSAIYRWAKSDLGLALSSYVSAGKETILKELKSHSSNLSHSSRATLHTEMALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQIQSAEAISSLGSTKELLTFISSKPTSDVHNHKICVTKEESVICRSKMKTPGCQLSQEDTSYALSTLPQQGGEKSSLYRHNNIILLSDDEDDEKMSNSNRRKALSSMPVGSGDKSRPFNNIGNTNLTISVTDTAVMGEKDAITLPHENMTSDSIRPLHVKQECHEHTGTVLASTPLDLSCHMGLTSAECTKNISAPSKVEASDHCLASLEISALNPQLSGTKVKTEDNHEKFGGCATSNVADHARTVNGNFSCGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGYRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVSLESCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGLEMFGFSSPAIVQAIEALDRSRVCSEYWDSRPYSRPLGQISQSCQSNVSGGNGQGVLLNKHIPVEVVAVLRSLCQKANAEELNSLYSILSESRPQADRSQIAQFLKEEIHKSQPP 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01939 1324 Pfam F/Y-rich N-terminus 1103 1145 IPR003888 GO:0005634
Phco6g01939 1324 PANTHER LYSINE-SPECIFIC DEMETHYLASE 209 1199 - -
Phco6g01939 1324 ProSiteProfiles JmjC domain profile. 428 591 IPR003347 -
Phco6g01939 1324 SMART fyrc_3 1154 1248 IPR003889 GO:0005634
Phco6g01939 1324 Gene3D - 1097 1234 - -
Phco6g01939 1324 ProSiteProfiles FYR domain FYRN motif profile. 1090 1148 IPR003888 GO:0005634
Phco6g01939 1324 Pfam C5HC2 zinc finger 681 731 IPR004198 -
Phco6g01939 1324 Gene3D Cupin 201 575 - -
Phco6g01939 1324 SMART fyrn_3 1104 1148 IPR003888 GO:0005634
Phco6g01939 1324 MobiDBLite consensus disorder prediction 108 143 - -
Phco6g01939 1324 Coils Coil 638 658 - -
Phco6g01939 1324 SMART JmjN_1 215 256 IPR003349 -
Phco6g01939 1324 Pfam F/Y rich C-terminus 1153 1236 IPR003889 GO:0005634
Phco6g01939 1324 ProSiteProfiles FYR domain FYRC motif profile. 1150 1240 IPR003889 GO:0005634
Phco6g01939 1324 FunFam Putative lysine-specific demethylase JMJ16 1096 1234 - -
Phco6g01939 1324 MobiDBLite consensus disorder prediction 113 137 - -
Phco6g01939 1324 MobiDBLite consensus disorder prediction 284 303 - -
Phco6g01939 1324 ProSiteProfiles JmjN domain profile. 216 257 IPR003349 -
Phco6g01939 1324 SMART cupin_9 428 591 IPR003347 -
Phco6g01939 1324 Pfam JmjC domain, hydroxylase 458 574 IPR003347 -
Phco6g01939 1324 Pfam jmjN domain 217 250 IPR003349 -
Phco6g01939 1324 SUPERFAMILY Clavaminate synthase-like 426 618 - -
Phco6g01939 1324 MobiDBLite consensus disorder prediction 911 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01939 Phco-Chr6 38597882 38608023 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco6g01939 JmjC 6.5e-46 CL0029