Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01927 ATGTCCACTTCCATTGAAAACAAGCACCACCACATCAATGAAACCACAGCATCCAATTCTGCAGAAAGGGTCTTTGATGGTGTCTCTGCCAAGGAGAGTAGGGGTTTGGATCTTGATTTGAATGAACCTATTATTAATAAAAGTCCTCAGGCTTCTCTTCCTTTTATCGATATCAATTTGGTTCCAATTTCTCAGGTTTCTAGTGATAATTGTAATGGGGCAATGTGCCAACAACCTCTTGCCCAGGAGTTGAATTTGTTACATGCTTCTCCTACCAAAGTTATTGAACAAGTGCATTCGTCCAATTCCAATGATGTGAAAAAGTTGAAGTTTCCCTTTGATCTTAATGCAAAATTTGATGAGGAGGATCAAATTTCTTGCTCCAAGGAAGCACATGCCAAAGTTGGTGGTTGCAGTGAAGCCATTCAGCCTTTACCTTCATCTTATTTGGAGGTCACACCAGAACATGTTCTTCCTACAGACAATGATAATGAGGACAGATCCAGTGTTGTTGGGGGAGGATCACACACTTCTCAGAACAGGAAGAGAAAGAGATCAGTTGAGGAATGTGAGAAAGGGAGAGGGAAGGCTTTTCGTAGAGACAATGTGGAAGTGAAGATTAAGAGACAAAACGATAATACAATAGATGATGGTTATCACTGGAGAAAGTATGGTCAAAAGCCTATTAAGGGAAATTTATTCCCTAGGGCCTACTACAAATGCACAACTGCTGGGTGTTCTGTAAAGAAGCACGTGGAACGTGATTCTCGCAACCAAAAAAATTTGATTAGTACTTATGAGGGAAGACACAATCATGAACAACCAACCTTTAGGAACCCTAGCAAACAATATGAAGATGATGAAGAAGATGAAGAACTTGCTGCTGTTGCTGCAGCCAATACCCTATTGACTTTTGGATCACCTAGGACTGTGAATTTTTACAATACCCCAAACCTTGCAGAACCTCAAGTTCATACTCTTCAACTACTTCCTAATGACCCAAATCCTGAATTTTTCAATAGGTTCATGAGACCCAACCATTTGGGAAGTTTCACTTATAACATGAATATTGGGTCTTCCTCCTACACTCCCGGAATGCATTATTCTTCTTTCATGAATAATGCCGTTACCATGCCTTACCCTTCCTATGGACTTAACCTTGACCACTATGCTGCCCCTCAACCTAGGCTTCCAATTCCACCACCATTCAACAACATGCCTTTTTCTTTTGGAGGTTTTTCTCAGGATTGGATGAATGCTACTTATGGGTCCACTTCAGTGTTTGGTTTCAGAGAAACAAGTGCAAGTGATCGTAGCTGGCACTAG 1326 0.4095 MSTSIENKHHHINETTASNSAERVFDGVSAKESRGLDLDLNEPIINKSPQASLPFIDINLVPISQVSSDNCNGAMCQQPLAQELNLLHASPTKVIEQVHSSNSNDVKKLKFPFDLNAKFDEEDQISCSKEAHAKVGGCSEAIQPLPSSYLEVTPEHVLPTDNDNEDRSSVVGGGSHTSQNRKRKRSVEECEKGRGKAFRRDNVEVKIKRQNDNTIDDGYHWRKYGQKPIKGNLFPRAYYKCTTAGCSVKKHVERDSRNQKNLISTYEGRHNHEQPTFRNPSKQYEDDEEDEELAAVAAANTLLTFGSPRTVNFYNTPNLAEPQVHTLQLLPNDPNPEFFNRFMRPNHLGSFTYNMNIGSSSYTPGMHYSSFMNNAVTMPYPSYGLNLDHYAAPQPRLPIPPPFNNMPFSFGGFSQDWMNATYGSTSVFGFRETSASDRSWH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01927 441 SUPERFAMILY WRKY DNA-binding domain 211 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01927 441 ProSiteProfiles WRKY domain profile. 210 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01927 441 Gene3D WRKY domain 199 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01927 441 FunFam WRKY transcription factor 203 276 - -
Phco6g01927 441 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 289 IPR044810 GO:0003700
Phco6g01927 441 SMART WRKY_cls 215 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01927 441 Pfam WRKY DNA -binding domain 216 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01927 441 MobiDBLite consensus disorder prediction 181 195 - -
Phco6g01927 441 MobiDBLite consensus disorder prediction 156 195 - -
Phco6g01927 441 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01927 Phco-Chr6 38300848 38307544 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco6g01927 WRKY 2e-23 CL0274