Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01921 ATGGAGAAGAAGAAGCTCAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCAATCTCTCAAGCACAAGATTCGCTGTGGATGATGAATTTGAGGACTGGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCTGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATTGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGAGCCGGAATGCACTTATTATTTGAGAACTGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATTTGCAGGAGGAATTACAAATTGGGCAAGGGCATCATACATTCCCAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTTTCCCAGGGAGTGGTTTCAGTGCCGGGTTGGAGTGCATACAGTGGTCAAGTGGGATCAATCTCTAATTCAGACAGTCTTCAGCAAGCAATGAGAAATGGTCAAACATACGGAACTTCTCGCCAAGGTGAGCTAGCAAACACAGGAACACATGGAGCATATTCTCAATTCCGTTCTGGCAGTGTTCCGGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCCGAATGTCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACATGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACTTATAATATCTCTGCATCGCCTTCAGCTGATGCCCCGAGCAAGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAGTTTATCTTCGGAAGGACTAGTTGAGTCGAGCTCAGCAACGCCCAGGCGGCTCTCATTATCAGAGACAAGACAGATTCCTTCTGGTGATGGTGACATTGATGATGATGGATGA 1335 0.4622 MEKKKLNLIIPNPQPHGIIPRRNSPISQAQDSLWMMNLRTGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSFAGGITNWARASYIPSPRWQGPSSYAPLILSQGVVSVPGWSAYSGQVGSISNSDSLQQAMRNGQTYGTSRQGELANTGTHGAYSQFRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPHERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADAPSKHLLRSSSGTAALSLSSEGLVESSSATPRRLSLSETRQIPSGDGDIDDDG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01921 444 FunFam Zinc finger nuclease 2 51 128 - -
Phco6g01921 444 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Phco6g01921 444 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Phco6g01921 444 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Phco6g01921 444 SUPERFAMILY CCCH zinc finger 308 333 IPR036855 GO:0046872
Phco6g01921 444 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Phco6g01921 444 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Phco6g01921 444 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Phco6g01921 444 Gene3D - 296 379 - -
Phco6g01921 444 MobiDBLite consensus disorder prediction 411 444 - -
Phco6g01921 444 PANTHER PROTEIN PHOSPHATASE RELATED 42 398 - -
Phco6g01921 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Phco6g01921 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Phco6g01921 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Phco6g01921 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Phco6g01921 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Phco6g01921 444 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Phco6g01921 444 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Phco6g01921 444 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Phco6g01921 444 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Phco6g01921 444 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Phco6g01921 444 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Phco6g01921 444 Gene3D - 51 128 - -
Phco6g01921 444 Gene3D - 129 180 - -
Phco6g01921 444 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Phco6g01921 444 MobiDBLite consensus disorder prediction 411 433 - -
Phco6g01921 444 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01921 Phco-Chr6 38206452 38211022 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g01921 zf-CCCH 5.4e-09 CL0537