Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01846 ATGAGAACATACAAGTGGGTGCACGAGATCATGGGAGGAAAGGGAAGGGGAAAAAAAGTTGCAAAAAAAAGATCCGATCCACGGCCCAAAGTCCATCTCATTACGGTCCAAAGCGACGCACTCGACTCTTGCTCACGTCCCTCACAGCAAGAATTAGCTCTCGACAGCACTAACTTGAACCGGATTGCGCGAAATCCTGTTCTTCAAATCCTAATCTGCAGAGATAACACAAAGTCAAGAAAGTTGGTCTTTCAGCATTTATATCCTGTTGAAGCAAAGATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCACTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCCTCCATAAAAAAGACTGAGTGGACTAGAGAAGAGGACGAAAAGCTACTTCATCTTGCCAAGCTTATGCCCACTCAATGGAGAACAATTGCTCCAATTGTGGGCCGCACCCCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATACAGCCTGTGTGAAAGATGAGAACTATGAGCCTGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAATCCTGAGTCAAAACCTGCACGACCTGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCTAACACCAAGGGAAAGAAAGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTAGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCAGGAATTGATATTAGGAAGCGGAAGAGAAAGAGGAAAGGAATAGACTACAATGCGGAAATTCCATTTGAGAAAAGGCCTCCTCTAGGCTTTTTTGATGTTACGGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAAGGTAAAAGGAGGGTTGATATTGAGGCACAATTAAGAAAGCAGGACATCGCAAAAAATAAAATTGCAGAAAGGCAAGATGCTCCATCTGCCATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAAGTTGAGTTATGCTAGTGACCTTACTGGGAGTCAGGAACTTGCTGAAGGTAATGGTGCAACACGTGCACTTCTGGCTAATTATGCGCAGACACCTGGTCAGGGAGCGACTCCTCTCCAAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATTTGGCCAGGTTGAGAGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCGGGTGTCACCCCTAAGAGAAAAGACATTCAGACACCAAATCCAATGCTGACACCTTCTGCAACTCCTGGAGGTGCAGGACTCACTCCTAGAATTGGCGTCACACCATCAAGAGATGGTTCTTTTAGCATGACACCAAAGGGAATTCCTCTTAGGGATGAGCTACATATTAATGAGGACACAAATATGCTTGACAGCTCTAAACTTGAGCTACATAGACAGGCTGATATGAGGAGAAGTTTGCAATATGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAAATAGTGATGGAACCAGTTCAAGAAGACACAGAAGAGCCTGAGGAGAAGATTGACGAGGATATGTCTGATAGAATAGCTAGAGAAAAAAAGGAAGAAGAGGCAAGACAACAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCGGCTGCATCATTGGAGCTCATAAGAAATTCCTTGATGAGAATTGATGGGGACAAAAGTTCGTTTGTTCCACCAACTTCTATTGAACAAGCTGATGAGATGATTAGAAGGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCCTTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAACGAGCCGCAAATGGGTCTGCCGTCCCTGTGATTGAAGATTTTCAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAGGACCAGTATGTTTGTGCAGCAATGGGACATGAAAATGAACCTCTCGAAGAATTTATTGAAGCACACAGAACCTGCCTCAATGATCTTATGTACTTTCCTACTCGTAGTGCGTATGGTCTTTCTAGTGTTGCTGGGAACATGGAAAAACTAGCAGCTTTACAGAATGAATTTGAGAACTTAAGTAACAAATTGGATGATGGTAATGAGAAGAAGGTACGGTTTGAGAAGAAGGTGTTGGTTCTCACACAAGGCTATGAGATGAGGGTAAAGAAAAGCCTCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGACATAGCTGCGACTGAATTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATACACAATCTATGGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAAATAGGTACGGGATTCTGATTGAAGAGCTGGAGAAGGTGCAAACTATCATGGACCGATGCAGATTACAAGCACAACAAGAGATTGAAGCAAACAACCATGCTCCCGAGTCAACTGAGATCACCGAGACCAAGACCCATAAAACTGATGTACAGGGTACTGAGAATGGTGAAGTTGTACCTCACTCGGAGGAGAATGGAAATGCTCTAGCAGTAGCAGTTGAGTCATCACGTGATGGAACTGCTGACCAGCAAGTAGATATTGTGCAGGACCAGGCTACTTCTAGCCCCAGTTATGACATGGATGTAGATTCTCATAAAATGCAAACGATACATGACACTAATGTTAAATTTACAAATGCTTCACCAGCTGCAGGGAATGTTGCACAAAAAATGGATGGTACCAGTACTACTGAAGGCAATGCTGACAATGGGGAGGCCATGCCAGAAATGGGTGGTATAGTGGAAACAAGTAGCCTCAATCATGGTGTATTTGCAGATGCTGTAAACCCACGTGACAGCAGCTTGGAAGAATCCAATGCTGTCGGGGAGGAGACAAATTAG 3195 0.4397 MRTYKWVHEIMGGKGRGKKVAKKRSDPRPKVHLITVQSDALDSCSRPSQQELALDSTNLNRIARNPVLQILICRDNTKSRKLVFQHLYPVEAKMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDTACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRKRKRKRKGIDYNAEIPFEKRPPLGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAERQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLSYASDLTGSQELAEGNGATRALLANYAQTPGQGATPLQTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKDIQTPNPMLTPSATPGGAGLTPRIGVTPSRDGSFSMTPKGIPLRDELHINEDTNMLDSSKLELHRQADMRRSLQYGLGSLPQPKNEYQIVMEPVQEDTEEPEEKIDEDMSDRIAREKKEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRIDGDKSSFVPPTSIEQADEMIRRELLTLLEHDNAKYPFDDKVNKEKKKGVKRAANGSAVPVIEDFQEDEMKDADKLIKEEDQYVCAAMGHENEPLEEFIEAHRTCLNDLMYFPTRSAYGLSSVAGNMEKLAALQNEFENLSNKLDDGNEKKVRFEKKVLVLTQGYEMRVKKSLWPQIEATFKQMDIAATELECFKALQKQEQLAASHRIHNLWAEVQKQKELEKTLQNRYGILIEELEKVQTIMDRCRLQAQQEIEANNHAPESTEITETKTHKTDVQGTENGEVVPHSEENGNALAVAVESSRDGTADQQVDIVQDQATSSPSYDMDVDSHKMQTIHDTNVKFTNASPAAGNVAQKMDGTSTTEGNADNGEAMPEMGGIVETSSLNHGVFADAVNPRDSSLEESNAVGEETN 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01846 1064 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 150 IPR017930 -
Phco6g01846 1064 SMART sant 99 148 IPR001005 -
Phco6g01846 1064 SMART sant 151 198 IPR001005 -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 1043 1064 - -
Phco6g01846 1064 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 200 IPR017930 -
Phco6g01846 1064 Pfam pre-mRNA splicing factor component 499 746 IPR021786 -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 911 939 - -
Phco6g01846 1064 Coils Coil 774 808 - -
Phco6g01846 1064 Pfam Myb-like DNA-binding domain 103 163 - -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 996 1020 - -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 1050 1064 - -
Phco6g01846 1064 CDD SANT_CDC5_II 148 199 IPR047240 -
Phco6g01846 1064 Gene3D - 98 152 - -
Phco6g01846 1064 ProSiteProfiles Myb-like domain profile. 147 196 IPR001005 -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 492 506 - -
Phco6g01846 1064 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 94 893 IPR047242 GO:0000398|GO:0000974
Phco6g01846 1064 FunFam CDC5 cell division cycle 5-like 153 213 - -
Phco6g01846 1064 CDD SANT 103 146 IPR001005 -
Phco6g01846 1064 FunFam CDC5 cell division cycle 5-like 98 152 - -
Phco6g01846 1064 Coils Coil 260 280 - -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 996 1027 - -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 203 243 - -
Phco6g01846 1064 Gene3D - 153 207 - -
Phco6g01846 1064 ProSiteProfiles Myb-like domain profile. 95 146 IPR001005 -
Phco6g01846 1064 SUPERFAMILY Homeodomain-like 126 199 IPR009057 -
Phco6g01846 1064 MobiDBLite consensus disorder prediction 473 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01846 Phco-Chr6 35232761 35237981 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01846 Myb_Cef 1.6e-57 No_clan