Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01839 ATGTTCTGTTATTTGCCACCGTTGTGCTTTTCCGCCACATTGTTGTTGGCCTCTTTGTCATTATCTGAGAAAGTTGTGCAGTTGCAAATGGAAGGAAAAACTGAGGATGAAGTGTTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGACGAGGAATCTTTAGTTCCTGAAATAGATGATGGAGTGAATCTTGAGGAGCCGTTAACAGAAGAGGAAATCCAAGATCTTATTTCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGAAGCAAAATCTTCAGGCAGAGGATTTGGAAACTGCTGTTGCCAATGAGATGGCAGCTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCCGGCATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAAGAGGAATCATTGGGTTGGCTCTGTGGCGACTTCAGAAATTGCTGAGTCAATTGCTGATGCTGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAGAAAAAACTTTGTGATGAAACCCAGGAGCCAGTGAAGAATGAAATTGAGGGTGATTGGGATATGTTCAATAAATTAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCGGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCATTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGCACACCTATCCTGTTGACAGAGAGCCCCACACAGAAACCTTATGGCGATCATTTAAACCCTGATACGAAAGAAGGAACTAATGATGGGAAAATAGTCTCTGACGATGGCAAGGATACATGTGCTCTTATGGAGACTGATAACATTAAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCTTACAAGTACTGGTGGCTTGTCAGATCCACCCAAATCCTTAGCAGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTATGCAGTGGTGAGCTTGATGCTGATAATAAAAAATCTCGGCTCATTGTTATTGATAGTGATAATGAAGAAGGGGTCACTAAGGAGAAATTAGATTGCAATACTCACGAAGTAAAAGAAGATTTATGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACAGTTTGTGATAAAATGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTATTAAAAGAAAAGGCATATCAAAAGGATCTGGGACAAGATTGTTCGAAGGTTTACTGCACATGGTGTGGAGGAAACAGTGAATTAGTTAGTTGTAAATTATGCAATATTTTATTTTGCACCAAGTGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTTCTGGAACTCAGGCCACTAGCTGGCATTGCTGTTGTTGCCGTCCAAATCTTTTGCAAAGACTGTCCTTACAACTAGAGAAAGCTGTGGGGTCTGCTACTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATAATTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAACGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGTCTGAAGTCTTTGAGAGGGCAGTTTTCTGCTTCATCAATTGAGATGAGCTCCGATGGGTGTAATGGAAACTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCGAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATTATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACGGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTGAACGTGCTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTCATGCTTGAAGATGTACCGAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTATCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGGGAAATTTGCCATGCTTTGCAAGATGGTCCTGACATTCTTGTATGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAAGCATTGAAACAAGTAAAAAGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATCTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAACCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCCTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGCTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGAAGAAGATGCTGTTGAAAATTTTCTCGTGGATGATAGTTCCAGTGACGAAAATTCTGATTATAATGTTCTTGCAGGAGAGAAGCTTGGGTTTGCAAATGACTTACTGCAAAGGAAAGATGGTAATGGCTATTTTCTGAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGCGGCAAAATGGTTTTACTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCGACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGAAAACGAGGAAAGTTCTGGAAGAAGGGGAAAGATTGGTATAGGTTGGACGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCTGGCTCCTTGGGTATAAATCTTCATGCAGCTAACCGAGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATTTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGACGACAACCCTGAGACTTTAGGCAATCTAGGTCAAGAAAACGAGCATCAAGACAACCCAATTTTGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCATGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCATTAGGTGAGTCTATTATGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCCCACGTATCAGAAACCTGCAACATCCTGCCAAGTAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4557 0.4126 MFCYLPPLCFSATLLLASLSLSEKVVQLQMEGKTEDEVLDIESASSGSFNDDSDDEESLVPEIDDGVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQAEDLETAVANEMAAFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNEIEGDWDMFNKLVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIHLKHRRHKKISKQREMSTPILLTESPTQKPYGDHLNPDTKEGTNDGKIVSDDGKDTCALMETDNIKGFDASHHLDKEKLTSTGGLSDPPKSLADGVIEQRGIKRVCSGELDADNKKSRLIVIDSDNEEGVTKEKLDCNTHEVKEDLCNNGTGSLPSECLDEKFLCTVCDKMALEVHPHPLLKVITCGDCNRLLKEKAYQKDLGQDCSKVYCTWCGGNSELVSCKLCNILFCTKCLKKNLGVELVSGTQATSWHCCCCRPNLLQRLSLQLEKAVGSATIVVSSSSSDSDDSDDSDNSDDSDAQINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRAKGGIFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKEEDAVENFLVDDSSSDENSDYNVLAGEKLGFANDLLQRKDGNGYFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGNLGQENEHQDNPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIMPIQKPEIPNDVPHVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01839 1518 PANTHER RAD54-LIKE 46 1516 IPR044574 GO:0016887
Phco6g01839 1518 CDD ADDz_ATRX 512 610 - -
Phco6g01839 1518 Pfam Helicase conserved C-terminal domain 1161 1285 IPR001650 -
Phco6g01839 1518 Coils Coil 1517 1518 - -
Phco6g01839 1518 Coils Coil 1401 1421 - -
Phco6g01839 1518 Coils Coil 136 156 - -
Phco6g01839 1518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 779 962 IPR014001 -
Phco6g01839 1518 Pfam SNF2-related domain 780 1080 IPR000330 GO:0005524|GO:0140658
Phco6g01839 1518 Coils Coil 78 124 - -
Phco6g01839 1518 CDD SF2_C_SNF 1153 1296 - -
Phco6g01839 1518 SMART ultradead3 753 974 IPR014001 -
Phco6g01839 1518 Gene3D - 1022 1368 IPR027417 -
Phco6g01839 1518 MobiDBLite consensus disorder prediction 631 665 - -
Phco6g01839 1518 MobiDBLite consensus disorder prediction 374 401 - -
Phco6g01839 1518 MobiDBLite consensus disorder prediction 385 401 - -
Phco6g01839 1518 ProSiteProfiles ADD domain profile. 504 636 IPR025766 -
Phco6g01839 1518 Gene3D - 730 1011 IPR038718 -
Phco6g01839 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1011 IPR027417 -
Phco6g01839 1518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1165 1333 IPR001650 -
Phco6g01839 1518 SMART helicmild6 1188 1285 IPR001650 -
Phco6g01839 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01839 Phco-Chr6 34744363 34776915 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g01839 SNF2_N 6e-51 CL0023