Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01833 ATGCAAACCCACCTGCTGTTCTTCTATTGTTACATTGGTCTCTCACTTGCTTTTACTGAAGCTGCAGTAGATGATGAATTGTCAACACTTCTCTCAATTAAATCCACTCTCATTGACCCAATGAGGCATCTGAAGGATTGGCAATTTCCAAGCAATGTGACACAACCAGGATCACCCCATTGTAACTGGACTGGAGTTGGTTGCAACTTTAAAGGCTTTGTAGAGAGTCTTGACCTCTCCAACATGAACCTCAGCGGTCGTGTTTCGGACCACATTCAATCTCTTTCAAGTCTGTCTTCTTTCAACATAAGCTGTAACAACTTTGCTTCATCACTGCCCAAATCACTGTCCAACCTCACCTCTCTCAAGAACTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTCCCCACTGGTCTTGGAAGAGCTGCAAGCTTGAGATTAATCAATGCATCGACCAATGATTTTTCAGGTTTTCTTCCTGAGGATATTGGAAATGCAACCTTGCTTGAGAGCCTTGATTTTCGAGGGAGCTACTTTGTGAGTTCAATCCCAAGGAGTTTTAAGAATTTGCAGAAACTCAAGTTTCTGGGCCTTTCAGGCAATAATTTCACAGGGAGGATTCCAGGATATCTCGGTGAACTTACTTCTCTGGAGACATTGATTATTGGATACAATTTATTTGAAGGTGAGATCCCTGCAGAGTTTGGCAACCTGACCAGTCTTCAATACCTTGACTTGGCTGTAGGCAGTCTCAGTGGACAAATTCCAGCTGAATTGGGTAAGCTCACAAAACTCAACACAATTTACTTATACCATAACAACTTCTCAGGAAAGATTCCTCCTCGACTTGGAGACATCACTTCACTGGCATTTTTGGACCTCTCTGACAATCAGATCTCCGGAGAGATTCCAGAAGAACTTGCTAAATTGGAAAACCTGAAGCTCCTAAATCTGATGACGAACAAACTAACTGGTCGAGTACCAGAGAAGCTTGGTGAACTGAAAAAATTACAGGTGCTTGAGCTCTGGAAAAATTCCTTACATGGTCCTTTGCCACCAAACCTTGGGCAGAACTCTCCTTTGCAGTGGTTGGATGTATCCTCTAACGCACTATCTGGGGATATCCCTCCAGGTTTGTGTACTACAGGAAATCTCACTAAACTAATCCTCTTCAATAATTCCTTCACTGGTTCCATTCCAAGTGGACTTGCAAATTGTTTGTCTTTGGTGCGTGTTCGGATTCAGAACAATCTTATTTCTGGAACTATTCCAGTTGGCTTTGGAAACCTCCTTGTCCTTCAACGGCTAGAATTGGCAAAGAACAACCTCACGGGGAAAATTCCCACTGATATTACCTCATCCACATCACTCTCTTTCATTGATGTATCTTGGAACCACTTTGAGTCATCTCTACCGTCAGATATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCTTCTCATAACACTTTTGGAGGAGATATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTATTGGACCTTTCAAACACCTATATTTCTGGCACAATCCCTGAAAGTATTGCTTCTTGTAAAAAATTAGTCAACCTTAACCTTCGAAATAACCACTTGACAGGAGAAATCCCAAAATCAATCACAAGGATGCCCACTTTATCTGTTCTTGATCTGTCCAACAATTCATTGACCGGTAGGATTCCTGAAAACATTGGCAATTGCCCTGCTCTAGAATTGCTGAACTTGTCCTATAACAAACTTGAGGGTCCAGTACCCTCCAATGGGATGTTGATGACCATAAATCCTAATGATCTTATTGGCAATGAAGGTCTTTGTGGAGGCAATCTCCCTCCATGTTCTCGAAGTATGGCTGTGACAAGCCATCGAATGAGCTCGCAAGTCAGACACATCATTATCGGTTTTGTGACTGGCATTTCAGTGATTTTAGCGCTTGGTGCAGCATATTTTGGTGCTAGATGTTTATACAATAGATGGCATTTATATAACAACTTCTTCTATGATTGGTTCAAACAGAACAATGAAGATTGGCCCTGGAGACTAGTAGCATTCCAGAGGATCAGCTTCACTAGTAGTGACATCCTGACTTGCATGAAGGAATCTAATGTCATAGGAATGGGGAGCACTGGTATCGTTTACAAAGCTGAAATCCATAGACCTCACGTAACCGTAGCAGTGAAGAAACTGTGGAGGTCACGGACAGATGTAGAAGATGGCAATGATGTGTTGAGAGAAGTGGAACTCCTAGGGAGACTTAGGCACAGGAATATTGTAAGGCTGTTGGGGTATGTGCACAACGAAAGGGATGTGATGATGGTTTACCAGTACATGCCTAACGGGAATCTTGGAACAGCAGTGCATGGTGAACAATCTGCAAGGTTGCTTGTTGACTGGGTCTCAAGGTACAACATAGCTCTAGGAGTTGCACAAGGGCTTAACTACCTCCACCATGATTGCCACCCACCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTTGACGCAAATCTAGAGGCCAGAATAGCAGACTTCGGGTTGGCAAGGATGATGATTCAAAAGAATGAGACAGTTTCCGTGGTGGCTGGATCATATGGATACATCGCACCAGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACGTATACAGCTATGGCGTGGTGCTTTTGGAGCTCCTAACTGGCAAAATGCCTTTAGACCCTTCGTTTGAAGAATCAACTGACATAGTCGAATGGATACGGAAGAAGAAAAGCAACAAATCCTTGTTAGAAGCACTGGATCCTGCTATAGCTAGTCAGTGCAAACATGTCCAAGAAGAAATGTTGCTTGTACTCCGGATTGCACTTCTATGTACCGCAAAGCTTCCCAAGGAAAGACCACACATGAGAGACATCATCACAATGCTTGGTGAGGCAAAGCCAAGAAGGAAAAGTGTTTGCCATAATGGGGGTCAAGAAAGCAGTAGCATGGAAAAGTCCACAGTCTTTACCACCTCCCCAATAGTAAGTCTTTTGTAG 3048 0.4311 MQTHLLFFYCYIGLSLAFTEAAVDDELSTLLSIKSTLIDPMRHLKDWQFPSNVTQPGSPHCNWTGVGCNFKGFVESLDLSNMNLSGRVSDHIQSLSSLSSFNISCNNFASSLPKSLSNLTSLKNFDVSQNYFTGSFPTGLGRAASLRLINASTNDFSGFLPEDIGNATLLESLDFRGSYFVSSIPRSFKNLQKLKFLGLSGNNFTGRIPGYLGELTSLETLIIGYNLFEGEIPAEFGNLTSLQYLDLAVGSLSGQIPAELGKLTKLNTIYLYHNNFSGKIPPRLGDITSLAFLDLSDNQISGEIPEELAKLENLKLLNLMTNKLTGRVPEKLGELKKLQVLELWKNSLHGPLPPNLGQNSPLQWLDVSSNALSGDIPPGLCTTGNLTKLILFNNSFTGSIPSGLANCLSLVRVRIQNNLISGTIPVGFGNLLVLQRLELAKNNLTGKIPTDITSSTSLSFIDVSWNHFESSLPSDILSIPTLQTFIASHNTFGGDIPDEFQDCPSLSVLDLSNTYISGTIPESIASCKKLVNLNLRNNHLTGEIPKSITRMPTLSVLDLSNNSLTGRIPENIGNCPALELLNLSYNKLEGPVPSNGMLMTINPNDLIGNEGLCGGNLPPCSRSMAVTSHRMSSQVRHIIIGFVTGISVILALGAAYFGARCLYNRWHLYNNFFYDWFKQNNEDWPWRLVAFQRISFTSSDILTCMKESNVIGMGSTGIVYKAEIHRPHVTVAVKKLWRSRTDVEDGNDVLREVELLGRLRHRNIVRLLGYVHNERDVMMVYQYMPNGNLGTAVHGEQSARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVSVVAGSYGYIAPEYGYTLKVDEKIDVYSYGVVLLELLTGKMPLDPSFEESTDIVEWIRKKKSNKSLLEALDPAIASQCKHVQEEMLLVLRIALLCTAKLPKERPHMRDIITMLGEAKPRRKSVCHNGGQESSSMEKSTVFTTSPIVSLL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01833 1015 MobiDBLite consensus disorder prediction 991 1015 - -
Phco6g01833 1015 FunFam MDIS1-interacting receptor like kinase 1 705 787 - -
Phco6g01833 1015 Gene3D Phosphorylase Kinase; domain 1 705 787 - -
Phco6g01833 1015 Pfam Protein kinase domain 707 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01833 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Phco6g01833 1015 Gene3D Ribonuclease Inhibitor 178 279 IPR032675 -
Phco6g01833 1015 Pfam Leucine rich repeat N-terminal domain 24 69 IPR013210 -
Phco6g01833 1015 FunFam MDIS1-interacting receptor like kinase 1 788 997 - -
Phco6g01833 1015 SMART LRR_typ_2 287 311 IPR003591 -
Phco6g01833 1015 SMART LRR_typ_2 335 359 IPR003591 -
Phco6g01833 1015 SMART LRR_typ_2 551 575 IPR003591 -
Phco6g01833 1015 SMART LRR_typ_2 191 215 IPR003591 -
Phco6g01833 1015 SMART LRR_typ_2 95 119 IPR003591 -
Phco6g01833 1015 PRINTS Leucine-rich repeat signature 290 303 - -
Phco6g01833 1015 PRINTS Leucine-rich repeat signature 551 564 - -
Phco6g01833 1015 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 170 974 - -
Phco6g01833 1015 SUPERFAMILY RNI-like 252 597 - -
Phco6g01833 1015 SUPERFAMILY L domain-like 47 349 - -
Phco6g01833 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 179 279 - -
Phco6g01833 1015 Gene3D Ribonuclease Inhibitor 280 375 IPR032675 -
Phco6g01833 1015 SUPERFAMILY Protein kinase-like (PK-like) 701 979 IPR011009 -
Phco6g01833 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 23 178 - -
Phco6g01833 1015 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
Phco6g01833 1015 Gene3D Transferase(Phosphotransferase) domain 1 788 1004 - -
Phco6g01833 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 362 624 - -
Phco6g01833 1015 Pfam Leucine rich repeat 530 588 IPR001611 GO:0005515
Phco6g01833 1015 Gene3D Ribonuclease Inhibitor 483 620 IPR032675 -
Phco6g01833 1015 Gene3D Ribonuclease Inhibitor 376 482 IPR032675 -
Phco6g01833 1015 ProSitePatterns Protein kinases ATP-binding region signature. 711 735 IPR017441 GO:0005524
Phco6g01833 1015 ProSiteProfiles Protein kinase domain profile. 705 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01833 1015 MobiDBLite consensus disorder prediction 987 1015 - -
Phco6g01833 1015 SMART serkin_6 705 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01833 Phco-Chr6 34320074 34323359 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco6g01833 Pkinase 3.8e-49 CL0016