Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01693 ATGGGTCGCGAAACTGTGTTCCTTCCAGCCCCACCAACCACTGCCACCACTGGAGTGAATCCAGTGGCAGCACCAGCTACACCACCTACTTCTCTTGCTCCTGGTTTTAGGTTCCACCCAACTGACGAGGAGCTTGTAATCTATTACCTGAAGCGCAAGGTTTCTGGCAAAAGTTTCCGATTTGATGCTATATCTGAAGTGGATATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAGTCGAGGTTGAAGACCAGGGACCAGGAGTGGTATTTTTTTAGTGCATTGGACAAGAAATATGGAAATGGTGGGAGGATGAACAGGGCTACCAACAAAGGCTATTGGAAAGCCACTGGGAATGATAGACCAGTGAAGCATGATCAAAGGACTGTGGGATTGAAGAAAACTCTGGTGTTTCACAGTGGCCGAGCTCCTGTTGGAAAGAGGACTAATTGGGTTATGCATGAGTACAGGCTTGTTGATGAGGAGCTAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCCTATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGACAACGATATGCACCCTTTGTTGAAGAAGAGTGGGATGATGAATCGGCAATGATTCCAGGGGCAGAGCCTGTGTATAATGGCTCTGTTGCCTACCAACCACTTGTTGAAGGCAACGTTGGTGTTTTATGCACTGAAGGGAGAAGTGGTGTTGTACAGGACACTCAATCCAACAATAAAGCTCCGTTTGATGTGAACAAGCTTCCTATAGAGACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCTCCTGAAAAGGATGATAATAATTGTAAGCAAGTGGATGAGTACCCTTCACCTCAAACAGACAATCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGGCATAACTTGAACTCCAACCACTCTAATGTTACTGGAGATACAATCCGAGCCAGCCAGGACCCATGCTCCTCTACAATAACAACTGCAGCAACAACACTCCCAACCACCACTGCTGGTGCCGCCACCACCAACACTGCACCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAAAGTCTTGCTTTAGTTAAGGCACAGGATTTTGACGCCGAAAACCTTGAGTCATCCATGCCTCCAAGCTCTGCCAAGTTCATCAAGAACTTGCAGAGTGAGGTCCACAAGCTTGGAGTCGAAAAGGAGACAATGAGGTTTGAGATGATGAGCGCTCAAGCGATGATTAACATTCTCCAGTCTCGACTTGATAGTGTCTGCAAAGAAAATGAGGATTTGAGGAGGAAGGTCCAAAAACCTTAG 1389 0.4658 MGRETVFLPAPPTTATTGVNPVAAPATPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPVGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDESAMIPGAEPVYNGSVAYQPLVEGNVGVLCTEGRSGVVQDTQSNNKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQVDEYPSPQTDNPKPFSQIYKRRRHNLNSNHSNVTGDTIRASQDPCSSTITTAATTLPTTTAGAATTNTAPKKHFLSALVEFSLQESLESKESLALVKAQDFDAENLESSMPPSSAKFIKNLQSEVHKLGVEKETMRFEMMSAQAMINILQSRLDSVCKENEDLRRKVQKP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01693 462 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 321 - -
Phco6g01693 462 MobiDBLite consensus disorder prediction 1 26 - -
Phco6g01693 462 ProSiteProfiles NAC domain profile. 32 186 IPR003441 GO:0003677|GO:0006355
Phco6g01693 462 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Phco6g01693 462 MobiDBLite consensus disorder prediction 278 292 - -
Phco6g01693 462 SUPERFAMILY NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Phco6g01693 462 Coils Coil 438 458 - -
Phco6g01693 462 Gene3D NAC domain 41 189 IPR036093 GO:0003677|GO:0006355
Phco6g01693 462 MobiDBLite consensus disorder prediction 278 307 - -
Phco6g01693 462 MobiDBLite consensus disorder prediction 10 24 - -
Phco6g01693 462 FunFam Nac domain-containing protein 86 41 189 - -
Phco6g01693 462 MobiDBLite consensus disorder prediction 293 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01693 Phco-Chr6 19942547 19953646 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco6g01693 NAM 4.4e-36 No_clan