Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01689 ATGGAAGCACCAGAGGAACTCTCTGTGGGGGGGTCCAAAGATCACACCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTGAGGCCACAATCCCCTATCCCCTTCTCCGTCACTGCCAATTCCTCCACCGGAGAAGGAGAAGGACAAGATTGCTGCAATGTTGATGACAACACCAACACCACCACCAACAAAAATTATGATATTAATAACAACAACAACAGCTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACAGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTCCTGGCACAAGGACAATCCCGGGAATCTCACAAACATGCCGAGGAAGATGTGGGCATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAAGCGGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTTCCTTCTTTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCAATCATGTCCATTGGCCAAGAGAAGAAGCAGCAACACCTTTTGTCGTCAGATGAGGAAGAGTTTCAATTGAAGACCAATAATAAATCACCATTTTCCCTTCAACTGAATACAAAGGGCAATTTGTACAACAAGTCCAAGGTGCATGAGTGTTCCATCTGTGGTGCTGAATTCACATCGGGGCAGGCACTGGGAGGCCACATGAGACGCCACCGTGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATATGTTGAACTTGGAATTGGATCTCAATCTTCCTGCCCCCGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTCAATCCAAGCAGCAACAACAACAACATGGACAGAAACAACAGCAGCAGCAGCAGCAGCAACAGCAACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1005 0.4756 MEAPEELSVGGSKDHTNIVKGKRTKRVRPQSPIPFSVTANSSTGEGEGQDCCNVDDNTNTTTNKNYDINNNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESHKHAEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAIMSIGQEKKQQHLLSSDEEEFQLKTNNKSPFSLQLNTKGNLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNMLNLELDLNLPAPEDDQRESKFSFQSKQQQQQHGQKQQQQQQQQQQQPQTSLVLTAPALVDCHY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01689 334 SMART c2h2final6 219 241 IPR013087 -
Phco6g01689 334 SMART c2h2final6 144 166 IPR013087 -
Phco6g01689 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 241 IPR013087 -
Phco6g01689 334 Gene3D Classic Zinc Finger 201 249 - -
Phco6g01689 334 Gene3D Classic Zinc Finger 122 200 - -
Phco6g01689 334 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Phco6g01689 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Phco6g01689 334 SUPERFAMILY beta-beta-alpha zinc fingers 143 241 IPR036236 -
Phco6g01689 334 MobiDBLite consensus disorder prediction 1 88 - -
Phco6g01689 334 MobiDBLite consensus disorder prediction 31 84 - -
Phco6g01689 334 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Phco6g01689 334 Pfam C2H2-type zinc finger 218 244 - -
Phco6g01689 334 Pfam C2H2-type zinc finger 143 169 - -
Phco6g01689 334 MobiDBLite consensus disorder prediction 293 320 - -
Phco6g01689 334 PANTHER ZINC FINGER PROTEIN ZAT5 75 305 - -
Phco6g01689 334 MobiDBLite consensus disorder prediction 282 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01689 Phco-Chr6 19885280 19886284 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g01689 zf-C2H2_6 6.6e-13 CL0361