Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01673 ATGCCCGCATGCCTCGCGCTTGACGATGTCCTTACATTGGCTTTGTTGTCCCTCTCCCAGGACTGGAATGTTGGGTCTGGTGACATAAACTCCACATGGAAGTTGTCTGATTCCACTCCATGCTCGTGGGCAGGAGTGCATTGTGATCATGCCAATAATGTGAATTCTCTAAACCTCAGTAGATATTCTATTTTTGGCCAATTAGGACCTGATATTGGACGTTTGATCCACTTGCAATCCATAGACTTATCATATAATAACATGTTTGAAAAAATTCCCCCAGAATTAAACAACTGCAGCATGCTTGAGTACATAGACATTACTACAAACAACTTTAGTGGAGAAATACCAGAGAGCGTTAGAAACTTGCAAGATTTGAAGTATGTAGATCTCTCAATTAATCTGCTTAGTGGTGAAATTCCTAAATCCTTGTTGGAAATTCCTCTCCTTGAAGAAGTGTATCTTAGTAACAACAGTTTAAGTGGTTCCATTCCCTCAAGTATTGGGAATATCACTAACCTTGTCACCCTGGATCTTGCTTTTAATCAGCTGTCAGGGACTATTCCCATGTCCATTGGAAATTGTAGTAAATTAGAGAATCTGTATCTGGAAGGTAATGAATTGCGGGGAGTTATTCCGGAGAGTATAAATAATCTTGAAAATCTTCTTGATTTATATCTGGAAGATAATAGTATTGGAGGTACTATTCAACTGGGATCTGGAAATTGCAAAAAGTTGTCTATTCTGAGTCTTTCTTTCAATAACTTTAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGCCTAACAGGGTTTTTTGCTGTAGGCAGTAACTTAGTTGGCAGTATACCGTCAACCTTAGGCCTCCTGCACAGCCTTTCTATTCTATTCATTCCAGAGAACCAATTGGATGGGAAAATACCTCCACAGATTGGTAATTGCAAATCACTGGAAGAGCTGCATTTGAATTCCAATGAACTCGAAGGAGAAATTCCTAGTGAATTGGGAAACTTGAGTAAATTACGCGATCTTAGATTGTATGAAAACCTTTTGACGGGAAAAATTCCACTTGGAATATGGAAAATTCAAACACTTGAGCAGGTCCACATATACATTAATAACCTTTCAAGAGAGCTACCACTTGAGATGGCAGAGCTTAAACATCTTAAGAATATCTCCATGTTTAATAATCAGTTCTCTGGAGTCATTCCTCAAAGCTTAGGAATCAACAGCAGTTTGGTTGTGTTAGACGTCACCTACAATAATTTCAGCGGTACCCTCCCACCAAATCTTTGCTTTGGAAAGCAATTGGTCAGGCTGAATACGGGTGGCAATCAATTTTATGGCAGCATACCTCCTGATATTGGACGATGCACAACTCTTACAAGGCTGAGACTTGAAGAAAACAATTTCACTGGGCCACTTCCTGATTTTGAAACTAATCCAAATCTCTTTCACTTGAGCATCAACAACAACAATATCAGTGGAGCAATTCCCTCAAGTTTTGGAAACTGCACAAATCTCTCTCTTTTAGATTTATCCATGAACAGCTTGACAGGTCTTATGCCCTCAGAGCTAGGAAACCTTGTAAATCTCCGGAATTTGTTTCTTTCTCACAATACTTTGAAAGGTCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATCGAGTTTGATGTTGGATACAATTTCTTGAATGGTTCGTTTCCATCAATTTTTCGGAACTGGACTGAATTAACAACTTTAAGGCTCTCAGAGAATAATTTTGATGGTGGTATTCCAGCTTTTTTGTCAGACTTTAAAAGGCTCAATGATTTACAACTTGGAGGAAACAAGTTTGGAGGAAACATTCCTAAATCAATTGGAGAACTGGTGGATTTGATGTATGATCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATTGAGAACCTGAAGAATCTGGTAAAACTGGATCTATCTTGGAACAATTTGACAAGAAGTATACAAGTTCTCAATGAGCTCAGTTCATTATCTGAGTTCAACATTTCATATAATTCTTTTGAAGGTCCTGTGCCACTACAGCTGACAAATTTACCAAATTCTTCTTTATCGTTTTTGGGCAATCCTGGCTTATGTATCTCAATTTTCACTGAAAGAAGCTATTTAAGGCCATGTGATACAAATTCAGAAAAGTCAAAAAAGCTCAGTGAAGTTGCAATTGCGATGATAGCACTTGGATCCTCAATATCTGTTGTTCTACTGCTGGGGTTAATTTATATATTCTTTATCAGAAAAATTAAGCAGGAAGCCACAATCAATGAGGAAGATAGTTCTCCATCCCTTCTCAATATGGTTATGGAAGCAACAAAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCGGAACTTGGTCCAGACAAAATTTTGGCGATAAAGAAGTTTGTATTTGCTAGTGATGAAGCGACAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAACGATTAGGCATCGAAATTTGGCCAAATTGGAAGGCTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGTCTGCATGATGCTTTGCATGAGAATAATCGTTCACACTCCTTGGAGTGGAATATCCGGAATAAGATAGCTATTGGAATTGCTCATGGATTGGCTTATCTCCATCATGACTGTGATCCTGTCATAGTGCACAGAGATATCAAAACAACCAATATACTTCTAGATTCTGAGATGGAGCCTCATATTGCAGATTTTGGTATTGCCAAGCTTTTGGATCAGCCTTCTACCTCCACACAGTCAATATATGTCAGTGGTACACTTGGTTATATAGCACCAGAGAATGCTTATACAACAACAAAGGGTAAAGAGTCCGATGTATACAGTTATGGGGTAGTATTGCTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTATGGAAGGAACAGACATAGTTAATTGGGCTAGATCTGCCTGGGAGGAAGCAGGACTTCTTGATGAAATTGTTGATTCAGAGTTAGCTGATGAAATTTCAAATTCTGATGTGACTAAACAAGTTACAGCGGTGCTTTTGGTGGCTTTGAGATGTACATTAAAGGATCCACGCAGCAGACTTACGATGAGGGATGTTATCAAGCATTTGAATGCTGATGCTAAAAAGTCCACATAA 3231 0.3881 MPACLALDDVLTLALLSLSQDWNVGSGDINSTWKLSDSTPCSWAGVHCDHANNVNSLNLSRYSIFGQLGPDIGRLIHLQSIDLSYNNMFEKIPPELNNCSMLEYIDITTNNFSGEIPESVRNLQDLKYVDLSINLLSGEIPKSLLEIPLLEEVYLSNNSLSGSIPSSIGNITNLVTLDLAFNQLSGTIPMSIGNCSKLENLYLEGNELRGVIPESINNLENLLDLYLEDNSIGGTIQLGSGNCKKLSILSLSFNNFSGGIPSSLGNCSGLTGFFAVGSNLVGSIPSTLGLLHSLSILFIPENQLDGKIPPQIGNCKSLEELHLNSNELEGEIPSELGNLSKLRDLRLYENLLTGKIPLGIWKIQTLEQVHIYINNLSRELPLEMAELKHLKNISMFNNQFSGVIPQSLGINSSLVVLDVTYNNFSGTLPPNLCFGKQLVRLNTGGNQFYGSIPPDIGRCTTLTRLRLEENNFTGPLPDFETNPNLFHLSINNNNISGAIPSSFGNCTNLSLLDLSMNSLTGLMPSELGNLVNLRNLFLSHNTLKGPLPHQLSNCNKMIEFDVGYNFLNGSFPSIFRNWTELTTLRLSENNFDGGIPAFLSDFKRLNDLQLGGNKFGGNIPKSIGELVDLMYDLNLSANGLIGELPREIENLKNLVKLDLSWNNLTRSIQVLNELSSLSEFNISYNSFEGPVPLQLTNLPNSSLSFLGNPGLCISIFTERSYLRPCDTNSEKSKKLSEVAIAMIALGSSISVVLLLGLIYIFFIRKIKQEATINEEDSSPSLLNMVMEATKNLNDQYIIGRGAQGVVYKAELGPDKILAIKKFVFASDEATSSSMTREIQTLGTIRHRNLAKLEGCWLRENYGLIAYKYMPNGSLHDALHENNRSHSLEWNIRNKIAIGIAHGLAYLHHDCDPVIVHRDIKTTNILLDSEMEPHIADFGIAKLLDQPSTSTQSIYVSGTLGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKALDPSFMEGTDIVNWARSAWEEAGLLDEIVDSELADEISNSDVTKQVTAVLLVALRCTLKDPRSRLTMRDVIKHLNADAKKST 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01673 1076 Gene3D Ribonuclease Inhibitor 164 272 IPR032675 -
Phco6g01673 1076 Gene3D Ribonuclease Inhibitor 12 163 IPR032675 -
Phco6g01673 1076 Gene3D Ribonuclease Inhibitor 379 482 IPR032675 -
Phco6g01673 1076 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Phco6g01673 1076 Pfam Leucine rich repeat 483 543 IPR001611 GO:0005515
Phco6g01673 1076 ProSiteProfiles Leucine-rich repeat profile. 653 675 IPR001611 GO:0005515
Phco6g01673 1076 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 482 1069 - -
Phco6g01673 1076 Pfam Leucine rich repeat N-terminal domain 13 49 IPR013210 -
Phco6g01673 1076 SUPERFAMILY L domain-like 632 700 - -
Phco6g01673 1076 SUPERFAMILY Protein kinase-like (PK-like) 780 1068 IPR011009 -
Phco6g01673 1076 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Phco6g01673 1076 SMART LRR_typ_2 530 554 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 316 339 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 171 195 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 75 99 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 219 243 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 506 529 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 651 674 IPR003591 -
Phco6g01673 1076 SMART LRR_typ_2 291 315 IPR003591 -
Phco6g01673 1076 Gene3D Ribonuclease Inhibitor 273 378 IPR032675 -
Phco6g01673 1076 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 395 723 - -
Phco6g01673 1076 Gene3D Phosphorylase Kinase; domain 1 762 868 - -
Phco6g01673 1076 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 167 292 - -
Phco6g01673 1076 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 760 868 - -
Phco6g01673 1076 Pfam Protein kinase domain 796 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01673 1076 SMART serkin_6 792 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01673 1076 FunFam Leucine-rich repeat receptor-like protein kinase 9 166 - -
Phco6g01673 1076 SUPERFAMILY L domain-like 32 185 - -
Phco6g01673 1076 SUPERFAMILY RNI-like 140 449 - -
Phco6g01673 1076 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 293 380 - -
Phco6g01673 1076 FunFam Serine/threonine-protein kinase-like protein CCR4 869 1076 - -
Phco6g01673 1076 SMART LRR_sd22_2 651 673 - -
Phco6g01673 1076 SMART LRR_sd22_2 195 221 - -
Phco6g01673 1076 SMART LRR_sd22_2 530 556 - -
Phco6g01673 1076 SMART LRR_sd22_2 171 186 - -
Phco6g01673 1076 SMART LRR_sd22_2 291 323 - -
Phco6g01673 1076 Gene3D Ribonuclease Inhibitor 483 734 IPR032675 -
Phco6g01673 1076 ProSiteProfiles Protein kinase domain profile. 792 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01673 1076 SUPERFAMILY L domain-like 387 625 - -
Phco6g01673 1076 Gene3D Transferase(Phosphotransferase) domain 1 869 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01673 Phco-Chr6 19634666 19638168 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco6g01673 Pkinase 3.2e-42 CL0016