Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01652 ATGGCTGTGAACAAAAATCTAAAGCTTATTCAGCTTATTCTGGTGATCCTAGCAGCTTCAAAAGCAGTATCTCAACCCTCTCCAGATTGCCCCAAAAACTGTGGCAATCTAAGCATTTCTTACCCTTTTGGGACACGTGAGGGCTGTTACATGAAAGACACTTTCCTCATCACTTGCAACCATGATAACTCCTCCACGTCCATTCCTCTATTGGGAACAAACAACATAGTGGTGCTCAACGTATCATTAGAAGATGGGGAAATTATAGTTTCAAGTCCTGTAATCCATGATTGCTATGGCACCAAAAGCAACAGTTCAAAGGACCAAAATGGTCTCAATTTGACCCACTTTTCAATCTCTAGTAGGAACAAATTCACAGCAGTTGGTTGTGACACGGTTGGAGTATTCATGGGTTACGATAGCAATAAAAAACATGTTACAACAAGAGGGTGTGTATCCATGTGTGACACACTTGGTGAAATAAAAAACAGAGGATCATGCGATGGCATTGGTTGCTGCCAAATTGATGTTCCCAACAGAGTACATGGTTTTGCAATGCAAAGTTGGAGTAGAAACAACCACTCCACCGTACGTGACTTCAATCCCTGTAACTATGTGTTTACAGTTGCGGAAGGGTATTACAACTTCCAAACAACAAATCTTAAGAGCCTCGAGAATACGAGGTTGCCCTTGGTGCTTGATTGGGCTGTGGGAAATCAAACGTGCGAAGAGGCCGAACAACATCCCAGTAGCTATGCGTGCAAGGATAAGAACAGTTATTGCTATTCAACCAATGGGATTGGTTATCGTTGCAAATGCCCTCATGGTGGAAACCCCTACCTCAATGATGGTTGCTATGATGAAGATGATTGCGCTTCGAACACCAATCCATGCGTCCACAAGAAAAGATGCAAAAGGGTCCCTGGAGGAGGTTCTGAGTGCTCATGTCCTAAGGGCCAGGAAGGAGATGGATTGAGAAAGGGCCAAGGCTGCAGACCCAAAACAGACAAAAACTTAGGGAATCTTATTCTTATAATTGGTTTGAGTTTGAGCTTAAGTCTATTGGCATTGGTTGTGGGATGCCTAAACATATACCCCCAATTCCGTGAAAGAAAGCTCATGAAAATGAGAGACAGCTATTTTCAGAAAAATGGTGGTCTATTATTGCAAACACAGATTGATTTGCTCAATGGCTCAACTGAAAGAGCCACAATTTTCACTGCTTTGGAGCTCAAGAAAGCCACCAACAACTATGATGATGATAGAATCATAGGCAAAGGAGGCCATGGAACAGTGTACAAAGGTATATTATCAAATGGCAGGGTTGTTGCCATCAAGAAGTCCATGGTTTCCAACCAAACTGAGATTGGGCAATTCATCAACGAAGTGGTTGTGCTTTCCCAAATCAACCATAGGAATGTTGTCAAACTAATAGGTTGTTGTTTGGAGACAGAGTTTCCTTTACTTGTTTATGAGTTCATCACAAATGGTACCCTCTATGAGCATCTACATTTTGAAGGTGAGGCATGTGGTGATAACCATAAACTTTCATGGAGAACACGTTTGAGAATTGTAGCAGAGACAGCAGAGGCTCTTGCATACTTGCATTCTTCTGTTTCCACACCAATCATACATAGAGATGTTAAAACTGCAAATATTCTTCTAGATGACAACCTCACAGCCAAGGTTTCTGACTTTGGGGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAGTTAACTACTTTGGTGCAAGGAACAATGGGCTACCTTGACCCTGAGTACTTACAAACAAGTCAACTAACTGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTCCTTGCAGAACTGTTGACAAGTAGGAAGCCAATTTCATTTTTAAGGCCTCAGAGTCAGAGAAATTTGTCAATGTATTTTGTTTCTGCAATGAATGAGGGTCGGTTGGCTCAAATATTGGACAACGAAATTGTGAGTGATGCAAGTGTTGAGTATGTGATAGAAGTCGCCAATCTAGCCAAAAGGTGTCTTAGATTGCATGGAGAAGAAAGACCAACCATGAAAGAAGTTGCAATGGAGTTGGAGGGAATAAGGGTCATGGAAAAACATTCACTAGGAGGAGCAAAAGATGTTGCATCCCAAGAAGAGAAAGAGAGCCTTCTCAAAGCAAGTTCTCATTTTAATATGGTTGATCATGGAGATGGTACTAGCAGTACAAGTTCTAGGTTCTATAAATTGCTTGAGCAGATCTTGGAACCAGTAGGAGATGGACGATAG 2271 0.417 MAVNKNLKLIQLILVILAASKAVSQPSPDCPKNCGNLSISYPFGTREGCYMKDTFLITCNHDNSSTSIPLLGTNNIVVLNVSLEDGEIIVSSPVIHDCYGTKSNSSKDQNGLNLTHFSISSRNKFTAVGCDTVGVFMGYDSNKKHVTTRGCVSMCDTLGEIKNRGSCDGIGCCQIDVPNRVHGFAMQSWSRNNHSTVRDFNPCNYVFTVAEGYYNFQTTNLKSLENTRLPLVLDWAVGNQTCEEAEQHPSSYACKDKNSYCYSTNGIGYRCKCPHGGNPYLNDGCYDEDDCASNTNPCVHKKRCKRVPGGGSECSCPKGQEGDGLRKGQGCRPKTDKNLGNLILIIGLSLSLSLLALVVGCLNIYPQFRERKLMKMRDSYFQKNGGLLLQTQIDLLNGSTERATIFTALELKKATNNYDDDRIIGKGGHGTVYKGILSNGRVVAIKKSMVSNQTEIGQFINEVVVLSQINHRNVVKLIGCCLETEFPLLVYEFITNGTLYEHLHFEGEACGDNHKLSWRTRLRIVAETAEALAYLHSSVSTPIIHRDVKTANILLDDNLTAKVSDFGASKLVPLDQTQLTTLVQGTMGYLDPEYLQTSQLTEKSDVYSFGVVLAELLTSRKPISFLRPQSQRNLSMYFVSAMNEGRLAQILDNEIVSDASVEYVIEVANLAKRCLRLHGEERPTMKEVAMELEGIRVMEKHSLGGAKDVASQEEKESLLKASSHFNMVDHGDGTSSTSSRFYKLLEQILEPVGDGR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01652 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Phco6g01652 756 FunFam Wall-associated receptor kinase 2 388 493 - -
Phco6g01652 756 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Phco6g01652 756 ProSiteProfiles Protein kinase domain profile. 418 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01652 756 Pfam Protein kinase domain 418 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01652 756 Gene3D Transferase(Phosphotransferase) domain 1 494 717 - -
Phco6g01652 756 SMART serkin_6 418 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01652 756 Gene3D Phosphorylase Kinase; domain 1 388 493 - -
Phco6g01652 756 CDD STKc_IRAK 424 695 - -
Phco6g01652 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 706 IPR045274 GO:0007166
Phco6g01652 756 FunFam Wall-associated receptor kinase 2 494 716 - -
Phco6g01652 756 Pfam Wall-associated receptor kinase galacturonan-binding 30 90 IPR025287 GO:0030247
Phco6g01652 756 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Phco6g01652 756 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01652 Phco-Chr6 19349590 19353432 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Phco6g01652 Pkinase 9.4e-49 CL0016