Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01624 ATGTCGGATGCGCCAGCCAGCCCGAGTCACGAGAGTGGGGGCGAGCAGAGCCCGCGCGGTTCCTCGTCTGGGGCCAGGGAGCAGGACCGCTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGGTCTGCCTCCCAACGGCAAAATTGCTAAGGACGCCAAAGATACCATGCAAGAGTGTGTTTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGAAAAATGTCAGAAAGAGAAGAGAAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCCACTTTAGGTTTCGAAGACTACATAGAGCCGCTTAAGGTGTACCTGGCAAGGTACAGAGAGGCGGAGGGTGACACCAAAGGATCTGCTAGAGGAGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGCTCACTGAACTATATTAGTTTGCAGGTGCAACCACAACATATGGTTTTGCCTTCAATGCAAAGCCATGAATAG 522 0.5077 MSDAPASPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEGDTKGSARGGDGSARPDQVGLAGQNSQLVHQGSLNYISLQVQPQHMVLPSMQSHE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01624 173 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Phco6g01624 173 MobiDBLite consensus disorder prediction 119 138 - -
Phco6g01624 173 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Phco6g01624 173 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Phco6g01624 173 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Phco6g01624 173 SUPERFAMILY Histone-fold 28 143 IPR009072 GO:0046982
Phco6g01624 173 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco6g01624 173 Gene3D Histone, subunit A 18 153 IPR009072 GO:0046982
Phco6g01624 173 MobiDBLite consensus disorder prediction 1 30 - -
Phco6g01624 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Phco6g01624 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco6g01624 173 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01624 Phco-Chr6 18781923 18786501 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco6g01624 CBFD_NFYB_HMF 2.5e-28 CL0012