Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01609 ATGTATTGGGGAGTTATGGCAGGCAACATGGGGTGGGGAGTAATGGAGGAAGAGGGGTGGAGGAAGGGTCCTTGGACTGCTGAAGAGGACAGATTGCTCATTCAGTATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGAAAGAGCTGTAGACTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACGATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAAAACTAAAAGCCCCTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAGGCAGCAGTTTCAACAGCAGCAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGCAGCAGCAGCAGCAATTCCAATTCAACTTGGACATAAAAGGGATCATAAACTTGCTTGAAGAAAACGACCACCGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTGAACATGTATCCAAACACTTCAGAGCCGCAGGGCTACTTCTACTCTATGTTCAATGTGAATGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTGTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCAACTGCTACAAGCAAAGCTAGTTTACACAATTTAGTGACTCCTTTCAGTTAA 789 0.455 MYWGVMAGNMGWGVMEEEGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMYPNTSEPQGYFYSMFNVNDNVSAPESSNEEILWDGLWNLDDVLCNFNAATATSKASLHNLVTPFS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01609 262 Gene3D - 79 123 - -
Phco6g01609 262 CDD SANT 24 69 IPR001005 -
Phco6g01609 262 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Phco6g01609 262 Gene3D - 22 74 - -
Phco6g01609 262 SMART sant 74 122 IPR001005 -
Phco6g01609 262 SMART sant 21 71 IPR001005 -
Phco6g01609 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Phco6g01609 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Phco6g01609 262 CDD SANT 79 120 IPR001005 -
Phco6g01609 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 208 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco6g01609 262 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Phco6g01609 262 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Phco6g01609 262 FunFam Myb transcription factor 22 74 - -
Phco6g01609 262 FunFam MYB-related transcription factor 79 123 - -
Phco6g01609 262 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Phco6g01609 262 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01609 Phco-Chr6 18430517 18431609 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01609 Myb_DNA-binding 7.9e-17 CL0123