Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01587 ATGAACGGCAGTTCCAGTGAAAGCAAGACCAGGGACATGGACGGGCAGCTGGCGGGGCTGGGCTACAAAGTTCGCTCATCAGAGCTCTGTCAAGTGGCTGAGAATATGGAGCGTTTAGAGAACGCCATCAACACTGTCAACTCATCCAGGGACATTTCTCAAGTAGTCTCCGACGCACTCCTCTACGATCCCTCCAACATAGGTTTAGGTTCCTGGGTCGATACGCTTCTCTCTGAGCTGGACCAAACCGTGTCGTTGCCCTACGATCTGTCTTCTGACCTACCCGATTTGCCCACGGATCCGAACCGCCAACTGGGGATGGTAACCACGGTCGAAGAAGACTCCGGGATAAGACTTGTTCACACACTCATAACGTGTGCGGATTCTGTGCAACGTGGCGACCTCGCATTCGCTGGCTCCCTCATCGACAGCATGCAGGCCCTGCTGGCTCACGTGAACACCTCCTGCGGCATCGGGAAGGTCGCCGGGTACTTCATCGACGCCTTGCGCCGCCGCGTCTCGTCTCCGCAAAACGCCGCGTTCCCAACCTCTCCCTACGAGAACGACGTTCTCTACCACCACTACTACGAGGCCTGCCCCTACCTTAAGTTCGCGCACTTCACTGCGAACCAGGCGATCCTGGAGGCGTTCAACGGCCACGACTGCGTCCACGTCATCGACTTCAACCTGATGCAGGGGCTCCAGTGGCCGGCGCTCATTCAAGCACTTGCGCTCCGCCCGGGAGGTCCGCCGTCGCTGAGGCTGACCGGCGTGGGACCTCCCTCGCCAGACGAGCGAGACACACTGCGCGAGATCGGCGCGCGGCTGGCGGAGCTGGCGCATTCGGTGAACGTGCGGTTCACGTTCCGCGGAGTGGCGGCGTGGCGGCTGGAGGACGTGAAGCCGTGGATGCTGCAGGTGAGTTCGAAGGAGGCGGTGGCAGTGAACTCGATCATGCAGCTACACCGCGTGCTTGGTTCGGGAATCGATGCGGTTCTCGGGTGGATCCGAAGTCTAAACCCTAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGGGAGGGGTTTCTGGAGCGGTTCACGGAGGCTCTGCACTACTACTCCACCGTCTTCGACTCGCTGGAAGCGTGTTCGGTGGAGCCGGACAAGGGTCTCGCCGAGATGTATCTGCAGAGGGAGATTTGCAACGTGGTGTGCTGTGAGGGACCGGCGCGAGTGGAGCGGCACGAGCCGCTGGCGAAGTGGAGGGAGCGGCTGGCTAAGGCCGGCTTGAGGCCCTTGCATTTGGGTTCGAACGCTTACAAACAAGCCAGCATGCTTTTGACTCTCTTCTCAGCCGAGGGTTACTGCGTGGAAGAAAATCAAGGGTGTTTGACTCTGGGTTGGCACAGCCGGCCTCTGATTGCGGCTTCGGCTTGGCAAGCCGCGCCGCTAAGAGAGGGTGAAACGGTGCGTTTCCAGCGTTGA 1473 0.6001 MNGSSSESKTRDMDGQLAGLGYKVRSSELCQVAENMERLENAINTVNSSRDISQVVSDALLYDPSNIGLGSWVDTLLSELDQTVSLPYDLSSDLPDLPTDPNRQLGMVTTVEEDSGIRLVHTLITCADSVQRGDLAFAGSLIDSMQALLAHVNTSCGIGKVAGYFIDALRRRVSSPQNAAFPTSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRVLGSGIDAVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEACSVEPDKGLAEMYLQREICNVVCCEGPARVERHEPLAKWRERLAKAGLRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAAPLREGETVRFQR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01587 490 Pfam GRAS domain family 119 476 IPR005202 -
Phco6g01587 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 472 IPR005202 -
Phco6g01587 490 ProSiteProfiles GRAS family profile. 110 476 IPR005202 -
Phco6g01587 490 SMART DELLA_2 14 90 - -
Phco6g01587 490 Pfam Transcriptional regulator DELLA protein N terminal 14 83 IPR021914 -
Phco6g01587 490 Gene3D - 12 80 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01587 Phco-Chr6 17994271 17995743 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco6g01587 GRAS 4.8e-125 CL0063