Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01562 ATGTTAAAAGCAGTGGCATCTGGGCTGTTGATTACCTCTGTCCTCATATGCGTATCTGCAAATGATAATGGATTTCCAAGATGTAACTGCGATGATGAGGCCAGCTTGTGGACTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTTTCCATACCTATTGAGCTGCTTTATTTTATCAGTTGCTCTAACGTCCCATTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGCTCAATGGATGGACCTATGGCCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCTAAAATTCTCACTGCATTGGTGTCGTGTGCCACCGCCATAACCCTCATCACGCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAGTTCATGCTGAAGAAGAAGACATGGGATCTTGGGCGTGAGGTTGATAATATTATGAGACAAAGGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATACGCAAGTCACTGGATAGACACAATATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTGAGCTTGCAAAATTGTGCTGTATGGATGCCTAATGTTGATAAAACTGAGATGAACCTTACTCATGAATTAAATGGGAGGAATTTTAATTTGCCTATACCCATCAACGATCCCGATGTTGTGAGAATTAAGGGAAGCGACCGGGTGAATATACTTAGGCCCGACTCAGCACTTGCCGTTGGAAGCAGTGGAGCTTCTGGAGAGGCAGGGCCGGTTGCGGCAATCCGAATGCCTATGCTACGTGTTTGTAATTTCAAAGGAGGAACTCCTGAACTAAGACAGACTTGTTATGCAATATTGGTCTTAATTCTTCCTATTGGAGAGCCTAGATCTTGGAGCAACCAGGAGCTGGAGATAATTAAGGTGGTTGCTGACCAGGTTGCAGTGGCTTTATCACATGCTGCAATTCTTGAAGAGTCCCAACTAATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAACAGGCAAAAAGGAATGCTCTGATGGCAAGCCAGGCAAGAAATGCATTTCAAAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTGAAGAATGAACAGAAACTTATCGTGGATGCAATGCTTAGAACTAGCAACGTCCTATCAAACTTGATAAACGATGCCATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGCTGAAGGAAGCAGCTTGTCTTTCAAAATGCATGTGTGTTTATAGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTCTGCCTGACAATGTTATGGGCGATGAGAGGAGGGTTTTCCAGGTGATTCTACATATGGTTGGGAACCTACTAGAACACAACCACGGGGGAGGGGTCCTCATATTTCGGGTTTTTGTGGAAACAGGAAGTCAAGGAAGAAGTGACAAGGGGTGGACAACCTGGAGACCAAGCTCTTCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAATAGTAGTGATTCTGAAGTGGGAAGCTCGGTTTCGTCAGGACTTGGGGGTAGGAAATATAACAGTGATAGGGTTGGCGGCAGATTGAGCTTCAACATTTGCAAGAGGGTAGTGCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTGCTCATGGTTATCCTCAAAGTATGACACTTCTTCTTCGATTTCAATTACGACCATCCATTACCATAGCCATCTCTGAGCCTGGAGAAGGTTCAGAGCGTACCGATTCGAATTCAATGCTGAGAAATCTTCAAGTACTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACCCAAAAATTGCTTCAGAAACTAGGTTGTGTAGTAACTCCTGTTACTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCTGGATCTTCCATTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAAGTTGCCACGAGGATTCGGAAGTTTAAAAGTGGAAATCGGCCAATGATTGTAGCATTGACTGCAAGTGCAGAAGAAGATCTGTGGGACAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGTAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTCCTGTGA 2280 0.4307 MLKAVASGLLITSVLICVSANDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDNIMRQREAAMHVRMLTQEIRKSLDRHNILYTTLVELSKTLSLQNCAVWMPNVDKTEMNLTHELNGRNFNLPIPINDPDVVRIKGSDRVNILRPDSALAVGSSGASGEAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPIGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNALMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSMLKEAACLSKCMCVYRGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLEHNHGGGVLIFRVFVETGSQGRSDKGWTTWRPSSSSGDVNIRFEIGINSSDSEVGSSVSSGLGGRKYNSDRVGGRLSFNICKRVVQLMQGNIWLVPCAHGYPQSMTLLLRFQLRPSITIAISEPGEGSERTDSNSMLRNLQVLLVDNDDVNRAVTQKLLQKLGCVVTPVTSGFECLTVIGPAGSSIQVILLDLHMPDLDGFEVATRIRKFKSGNRPMIVALTASAEEDLWDRCMQVGINGVIRKPVLLQGIASELRRILMQGNNVL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01562 759 FunFam Ethylene receptor 631 755 - -
Phco6g01562 759 CDD REC_ETR-like 633 748 - -
Phco6g01562 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Phco6g01562 759 SMART REC_2 633 752 IPR001789 GO:0000160
Phco6g01562 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 590 IPR036890 -
Phco6g01562 759 ProSiteProfiles Histidine kinase domain profile. 371 585 IPR005467 -
Phco6g01562 759 Gene3D - 428 606 IPR036890 -
Phco6g01562 759 Gene3D - 330 427 - -
Phco6g01562 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Phco6g01562 759 FunFam Ethylene receptor 4 331 425 - -
Phco6g01562 759 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 614 IPR003594 -
Phco6g01562 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 754 - -
Phco6g01562 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Phco6g01562 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 602 - -
Phco6g01562 759 Pfam Response regulator receiver domain 635 742 IPR001789 GO:0000160
Phco6g01562 759 Coils Coil 334 364 - -
Phco6g01562 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Phco6g01562 759 SUPERFAMILY GAF domain-like 186 331 - -
Phco6g01562 759 SUPERFAMILY CheY-like 630 752 IPR011006 -
Phco6g01562 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Phco6g01562 759 Gene3D - 619 757 - -
Phco6g01562 759 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Phco6g01562 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Phco6g01562 759 Gene3D - 161 329 IPR029016 -
Phco6g01562 759 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01562 Phco-Chr6 16966773 16969606 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco6g01562 HATPase_c 2.7e-07 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01562 6 16966773 16969606 Phco6g01562 6 16966773 16969606 ECH
Phco11g01304 11 9797339 9800333 Phco6g01562 6 16966773 16969606 ECH