Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01479 ATGGGAAGAGCTCCTTGTTGTCAGAAAGTGGGGCTGAAGAAGGGGAGGTGGACAGCAGAGGAAGATCAGATCTTGGCAAAATATATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCTGGATTATTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAGGAAAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGGTGGTCCTTGATAGCAAGTCATTTGCCAGGAAGAACGGACAACGAGATTAAGAACTACTGGAATTCTCATCTAAGCAGAAAAATTTACAGTTTCCCAAGGATGGAGAGGCAACAAGGTGTAGGTGCCATGGATACAGCTAAAGTGGTGTGTATTCCTCCCAAGCGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAAACTACACCCAAAATTCCGACAGACCCAAACACAGTTTCACTGAACAGAATAGTAGTGACAGCAGAGTTCCGAAGGCAGCGGAGAGCGAGGGTTTGTTGAACGGCGTTAGGGAGTGGAAGGCGGCGGAGGTAGATGAAAAGGGTGAGAAGGAGAAAAGTGGTGATGGGGAGATGTTAGGAGTGTGTGAATTTGAGGGCATTGATGAGGGGAGTGGGGCGTTGGGCATTAGTGAGATGTTGGAAAGTTACTTGGCGGAAACATGTGGGGTTTGGGACATAAGTGAGGAGAGAGAGAGCAATGACGTAGAAGTGGTGGAAGTGGTGGGTGTTGCAGATGCGTGTCCCAACAAAACGAGGTCGTGCGATAGTAGCGTGAATGAGTATTCATGTTCTTCCATGGGATTGGGCTTGGATAAACTATGGGATTGGGAGAGCGTGATAGAGTTCAATAACATTTCTGAGTCTCCACTCGTTTCTGAGCATTCCGATGACAAAGATAAACTTCTGACTTGGCTGTGGGAGGACGATGATTGGGATAGCGATGGCAACAAATTGGGAGAGACAGATCCGCAGATACAAAACGAGGTTGTTGATTGGCTTCTCTCTTGA 1080 0.4694 MGRAPCCQKVGLKKGRWTAEEDQILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPRMERQQGVGAMDTAKVVCIPPKRKGGRTSRWAMKKNKNYTQNSDRPKHSFTEQNSSDSRVPKAAESEGLLNGVREWKAAEVDEKGEKEKSGDGEMLGVCEFEGIDEGSGALGISEMLESYLAETCGVWDISEERESNDVEVVEVVGVADACPNKTRSCDSSVNEYSCSSMGLGLDKLWDWESVIEFNNISESPLVSEHSDDKDKLLTWLWEDDDWDSDGNKLGETDPQIQNEVVDWLLS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01479 359 Gene3D - 11 67 - -
Phco6g01479 359 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Phco6g01479 359 CDD SANT 16 61 IPR001005 -
Phco6g01479 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco6g01479 359 Gene3D - 71 116 - -
Phco6g01479 359 MobiDBLite consensus disorder prediction 154 181 - -
Phco6g01479 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco6g01479 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco6g01479 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco6g01479 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco6g01479 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco6g01479 359 CDD SANT 71 112 IPR001005 -
Phco6g01479 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco6g01479 359 MobiDBLite consensus disorder prediction 154 187 - -
Phco6g01479 359 SMART sant 13 63 IPR001005 -
Phco6g01479 359 SMART sant 66 114 IPR001005 -
Phco6g01479 359 FunFam Myb transcription factor 11 67 - -
Phco6g01479 359 FunFam Myb transcription factor 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01479 Phco-Chr6 15443025 15448625 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01479 Myb_DNA-binding 3.4e-13 CL0123