Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01469 ATGTCCATACTCAAAGAATCTCCATTATCAATGGCCTTGAGTCCTTCATCTTTCGTCATCCTACTGGCATATGGTGCATTGTTAATTCTGATTTTTGTGACGCCATGCTGGTATGTCATATTCCTACGTATGGAAAAAGATGTGAATTTGTTGAACTCAAAAAACAGTGTTCCCCAATTGCAATCAGAAATTGAGCACTTAGCTCAAATGTTACACCCAATGAAATCATCATCAACAAACATGGCAAGATTTTTGAGTTCAGTTCTTGATGATACTACCAATGTCTCCTTCTCTCATATTAAGACCAAGGTGGCTCCGTTAATGTTTGAAGCATTTGAGACGGTTCCATACTTGGTCCAAATCTCATACATAGGGGTAGAAGGTCTCTTTTTCTCCTACTACACTCATAATGATGAAGCTCTAGCTATGTACTCCAACTCATCATCATCAAGTTGGGGTGCCTTCAACAAAATCTACACTCAACCTGTGAATCGTGAAACTGGAGAGGTTCATGGTGAAGCCACGAACATAGTATCTAACCCTTTTATGAATGCAAGTTGGATTGGGGAAGCACTTAATGTGTCAAGTGGGTTTTCCTCATTGGGAACCAAGTGGGACAATGGTGATCTTTTGTTCCTCACTTCAGCTAGAATCATGACAAGAGGAGTGATCTCTCTTGGCTTTTCTGCAACGCCAATAACTGATTTTGTCACTCGCATAGACCAACAACATGGCACAAAGTCCTATTTAGCTACGAAAGATGGAAAAATTGTTGTGGAAGGGATTCAACTCACCCACTTCCTCATTTCTAATGATACAGTTTCGTTCCAATCAGTGAACGCAAATGGTGATCCCGCAAGTAATAAGGGCACTGTCTCATGCAAGGATGGAGCTGTTGCTTCTTTTTTCAATATTCGGGATACTGCATGTTCAATTCACTGCTACACTATCGATATAATGGGAATAGAATCGGTGTATGTGTTGGGTGTCCCAGAAGAAGGACATGGGAGCATTGGTCAGAATTACAAGAAAAAGGGATTGATAGTGTTTGTGATAACGATGGTCACTATATTTGTAGCTTTCTGTAGTTTTCTATACATAAACTGTGAAGCCTTTAGGCGAGAAATGCATTTGTGTGCCTCACTCATCAAACAGTGTGAAGCCACCCAACAAGCTGAGAAAAAGAATATGAATAAGAGCGCCGCTTTTGCAAGTGCCAGCCATGATGTTCGTGCTTCTCTCGCAGGCATCACCGGTTTGATAGAGATATCTTCAGAGTTGGTAGCCCCCGGTTCAGAATTGGAGACCAATTTGAAACAAATGAATAGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATAGAGGCAGGAAAAATGCAACTTGAGGAAGAGGAGTTTGATGTGTTCCATCTACTAGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGTGAAGAAAGGTGTAGATCTAGTGTTAGACCCTTGTAATGGTTCTGTTGTGGGATATTCTCGCGTGAAAGGTGATAGGGGCAAACTAAAACAAGTCTTGTGTAATTTACTGAGCAATGCTGTGAAATTTACTGATGAGGGACACATAGCAGTACGCGCATGGACTCGGAAGCCACAATTATTGCAGAACTCAACAGTCACTTTTAACCAATTGGGTTCCAAGAAATATTTATCATGCTTATTTCGTAACAAAACTGAAGCTCGTGGTGAGGTGGAATCCACGCGTTCAATCCAAGAAGATCCTCACTTTATGGATTTTATATTTGAAGTGGATGACACAGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTTTTCGAGAATTACGTCCAAATAAAAAACACAGCTCTTGGTCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCGTTGGTGCGTTTGATGCATGGAGATATTGAAATTGTCGAGAAGGATACTGGTGAAAAAGGGACATGCTTCAAGTTCAATGTGCTTCTCACTGTATGTGAGAATGAGGCACAATCAGATGGTAACAGAAGGGAGGGTGTTGGTTGTGGATCAGGAGACAGAATGCAAGGTCAGGAGCAAACTATGCACGCTTCATGTTCTGGTTCTTCTAGAATTTGTTCCATGAGTCCTAGGTTACGTATTTGCAGCTCTAGTCCTAAGCCTGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGATGAGGAACGCCAAAGGACTTCACGAAGGTTCCTGGAGAAGTTAGGGATCAAAGTTAAAGTTGTGAATACAGGGAAAAATCTATTTTATACTCTTAGAAAGATCAAGCTGAAGGCTAAGCATTCTAGTGGCCAAAATTCTCCAGGGTCTTCAGATTTGAGTTATTGCTCTACACCTCATAGTTCTCCTGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGATGAAACTGAGCTCATGCCTTTAGTTTTCAAGAAAACTGATATGGGAGCTTCTCCCTGCTTCATCCTTATTGTGATTGATGCAAATGCAGGACCCTTTTCTGAGCTTTACACGATTGTATCCAACTTCAAGAAAGACCTTCGCAACCCTTGTAAGGTTGTGTGGTTGGATAAGCCCTTTATGCGTAGAATCAACCTCAAGGCCCTTAATCAAGATGACATTGTCACATCCAAACCATTTCATGGTACTCGATTGTTCCAAACCATAAAGCTCCTTCCTGAGTTTGGTGGTGCTTGGAAAAGCAATTCCAGTAGATCTAAGAGGGAAATGACTAATGAGAGAGCTACATTGAAGACTTGCAAGGATCCAGGTTTGTCAAAATACACATTTCCTCTACTGGACAGATCACAAGTGTCTTCAACTGATGAAAGTACATTCCAAACTACTGAACAAATTTGGAAGGGAAAACAACCAATCAAGGCAAAAATAACTCTTGTTCATCAAGGAGAAACGCAAGAGGTTGGAAACTCATCAGGGTGTCGTAAATCCTTGAGGGGTAAGAAGTTTTTGGTTGTTGATGACACTGCATTTCTGCGCAATATAGCATCGGCTACTTTGATTTCTCTTGGTGCCACCGTGGAGCAATGTGAGAATGGTGAACAAGCTGTGAGGCTAGTTGATGAAGGTCTAGCTCGGGAGTTTCCTCATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAATTATGGACGGGCTTGAGGCAACAAAGTGGATACGAAGGATAGAGAAAGCGTATGATATTCACATACCTATCATTGCATTGACTGCTGGAACAGAAAGAATAACAATAGAGAGTGGAATGGACTATCATATGGTGAAACCGATTAACAGAGAGGATTTACTTAAAGCTATCACATATATAAATGTTAAAGGGTGA 3378 0.4109 MSILKESPLSMALSPSSFVILLAYGALLILIFVTPCWYVIFLRMEKDVNLLNSKNSVPQLQSEIEHLAQMLHPMKSSSTNMARFLSSVLDDTTNVSFSHIKTKVAPLMFEAFETVPYLVQISYIGVEGLFFSYYTHNDEALAMYSNSSSSSWGAFNKIYTQPVNRETGEVHGEATNIVSNPFMNASWIGEALNVSSGFSSLGTKWDNGDLLFLTSARIMTRGVISLGFSATPITDFVTRIDQQHGTKSYLATKDGKIVVEGIQLTHFLISNDTVSFQSVNANGDPASNKGTVSCKDGAVASFFNIRDTACSIHCYTIDIMGIESVYVLGVPEEGHGSIGQNYKKKGLIVFVITMVTIFVAFCSFLYINCEAFRREMHLCASLIKQCEATQQAEKKNMNKSAAFASASHDVRASLAGITGLIEISSELVAPGSELETNLKQMNSCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFHLLEDVVDFYHPVAVKKGVDLVLDPCNGSVVGYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWTRKPQLLQNSTVTFNQLGSKKYLSCLFRNKTEARGEVESTRSIQEDPHFMDFIFEVDDTGKGIPKENYKSVFENYVQIKNTALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGEKGTCFKFNVLLTVCENEAQSDGNRREGVGCGSGDRMQGQEQTMHASCSGSSRICSMSPRLRICSSSPKPEASLVVLLIVDEERQRTSRRFLEKLGIKVKVVNTGKNLFYTLRKIKLKAKHSSGQNSPGSSDLSYCSTPHSSPDIATRVSLSSMDETELMPLVFKKTDMGASPCFILIVIDANAGPFSELYTIVSNFKKDLRNPCKVVWLDKPFMRRINLKALNQDDIVTSKPFHGTRLFQTIKLLPEFGGAWKSNSSRSKREMTNERATLKTCKDPGLSKYTFPLLDRSQVSSTDESTFQTTEQIWKGKQPIKAKITLVHQGETQEVGNSSGCRKSLRGKKFLVVDDTAFLRNIASATLISLGATVEQCENGEQAVRLVDEGLAREFPHPPYDYILMDCQMPIMDGLEATKWIRRIEKAYDIHIPIIALTAGTERITIESGMDYHMVKPINREDLLKAITYINVKG 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01469 1125 SUPERFAMILY CheY-like 996 1119 IPR011006 -
Phco6g01469 1125 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 387 466 IPR036097 GO:0000155|GO:0007165
Phco6g01469 1125 Gene3D - 385 465 - -
Phco6g01469 1125 Gene3D - 466 677 IPR036890 -
Phco6g01469 1125 SMART HisKA_10 398 464 IPR003661 GO:0000155|GO:0007165
Phco6g01469 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 670 IPR003594 -
Phco6g01469 1125 CDD HisKA 396 460 IPR003661 GO:0000155|GO:0007165
Phco6g01469 1125 SMART REC_2 999 1118 IPR001789 GO:0000160
Phco6g01469 1125 Gene3D - 978 1122 - -
Phco6g01469 1125 Pfam Response regulator receiver domain 1002 1118 IPR001789 GO:0000160
Phco6g01469 1125 ProSiteProfiles Histidine kinase domain profile. 405 672 IPR005467 -
Phco6g01469 1125 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Phco6g01469 1125 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Phco6g01469 1125 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Phco6g01469 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 129 1119 - -
Phco6g01469 1125 Pfam His Kinase A (phospho-acceptor) domain 400 464 IPR003661 GO:0000155|GO:0007165
Phco6g01469 1125 ProSiteProfiles Response regulatory domain profile. 1000 1122 IPR001789 GO:0000160
Phco6g01469 1125 SMART HKATPase_4 514 672 IPR003594 -
Phco6g01469 1125 CDD REC_hyHK_CKI1_RcsC-like 1001 1118 - -
Phco6g01469 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 667 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01469 Phco-Chr6 15299717 15307212 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco6g01469 HATPase_c 2.7e-24 CL0025