LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g01463	ATGACCCTGGCGAATCCCATGCGTCGAATCCGTCTTCTGCACTCCTTCTCCGTCATCTACGAAACCCTAATTCCCCTAAACTTGGCAAAACCACCAAATTCGAATACAATGGCTTCGATTCAACGTCCTGCGAGTTCAGGATCGTCGGAGGGAGGAGATCCAGCGGTGAACGAGAGGAAGAGGAAGCGGATGGAATCGAACCGCGAATCGGCCCGGAGATCGCGCATGCGGAAGCAGAAGCAGCTGGAAACCCTAACCGAGGAAGCAGGCCGATTGCAAAGCGAGAACGCGGCTCTGGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTTGAGATGGAAGCCGGCAACGACATCATAAGAGCTCAGACAATAGAACTCGCCGATCGCTTGCGCTTTCTGAATTCAATTCTTGAGATCGCCGAAGCGACCGGCGATCTCTCCGTCGAGATCCCCCAGATTCCGGACCCTCTCTTCAATCCCTGGCAGATCCCCCACCCTATGATGGCGTCGCCGGACATGTTCCTCCATGGAATTCAAGGACTGTTTGCTTCATAA	558	0.5448	MTLANPMRRIRLLHSFSVIYETLIPLNLAKPPNSNTMASIQRPASSGSSEGGDPAVNERKRKRMESNRESARRSRMRKQKQLETLTEEAGRLQSENAALAQSIKAKEEAYVEMEAGNDIIRAQTIELADRLRFLNSILEIAEATGDLSVEIPQIPDPLFNPWQIPHPMMASPDMFLHGIQGLFAS	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g01463	185	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	62	77	IPR004827	GO:0003700\|GO:0006355
	Phco6g01463	185	CDD	bZIP_plant_GBF1	60	110	IPR045314	GO:0003700\|GO:0006355
	Phco6g01463	185	SMART	brlzneu	55	119	IPR004827	GO:0003700\|GO:0006355
	Phco6g01463	185	MobiDBLite	consensus disorder prediction	30	89	-	-
	Phco6g01463	185	MobiDBLite	consensus disorder prediction	30	52	-	-
	Phco6g01463	185	PANTHER	BZIP TRANSCRIPTION FACTOR 44	39	171	-	-
	Phco6g01463	185	FunFam	BZIP transcription factor	57	108	-	-
	Phco6g01463	185	MobiDBLite	consensus disorder prediction	54	85	-	-
	Phco6g01463	185	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	57	104	IPR004827	GO:0003700\|GO:0006355
	Phco6g01463	185	Coils	Coil	61	102	-	-
	Phco6g01463	185	Gene3D	-	57	115	-	-
	Phco6g01463	185	SUPERFAMILY	Leucine zipper domain	59	112	IPR046347	GO:0003700\|GO:0006355
	Phco6g01463	185	Pfam	bZIP transcription factor	59	114	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g01463	Phco-Chr6	15158330	15158988	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Phco6g01463		bZIP_1	1.5e-10	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g02441	2	54503809	54504243	Phco6g01463	6	15158330	15158988	PCT