Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01429 ATGAGTGTTCGGGTGATGAGAAGCTTATCAGATACTGAATTATCTGCTACATATGGAAGTGAAGAAGAGATGGTAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTCTCTTCTGATCAACTATGTCAACCTCCTCGGCGAAGGCCACTGGAACTCCCTCGCTCTCTCTGCTGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAATTGCCTGGTAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCCAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCGGATTCAGGCTTCTTCTGGGAATGCCTCTTCTTCCTATGGACATGATCAAACCACATTGTGCAACACTCAAACCCACGGTGAATCTAGTGGGGCCAATCCCATGATGTTTTGTGACAGCTCAATGATTTCCTCGTACTCTTCAGGGGTTGATGTTCAGCCTCCTTCTGTCTCTGATGCAAGTACAACTTCATCTTGCAATTTAATGGGAGATGTTAGCTGCTCATCGGACAGTGCTCAAAAGGGGTGGCAGCAGTGGGACTACTCTGATCTCCAAGCATTTGAACCGAACCATGGTTTTGGTGATGCAGACTTGTGGACCGATGAGAACATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 837 0.4612 MSVRVMRSLSDTELSATYGSEEEMVIKKGSWTEEEDSLLINYVNLLGEGHWNSLALSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNASSSYGHDQTTLCNTQTHGESSGANPMMFCDSSMISSYSSGVDVQPPSVSDASTTSSCNLMGDVSCSSDSAQKGWQQWDYSDLQAFEPNHGFGDADLWTDENMWFLQQHLADDF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01429 278 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 25 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco6g01429 278 Gene3D - 25 81 - -
Phco6g01429 278 Gene3D - 85 126 - -
Phco6g01429 278 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Phco6g01429 278 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Phco6g01429 278 SMART sant 27 77 IPR001005 -
Phco6g01429 278 SMART sant 80 128 IPR001005 -
Phco6g01429 278 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Phco6g01429 278 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Phco6g01429 278 CDD SANT 30 75 IPR001005 -
Phco6g01429 278 FunFam Myb transcription factor 28 80 - -
Phco6g01429 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Phco6g01429 278 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Phco6g01429 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Phco6g01429 278 FunFam MYB transcription factor 85 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01429 Phco-Chr6 14564782 14565859 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01429 Myb_DNA-binding 1.3e-15 CL0123