Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01428 ATGGATGCTAACTGTGGGTCCCTAGTAGAGACACAAGCCAAGATGCGACATAGTGAAAACGAGATGCTAGGCCTCAGAAAAGGTCCATGGACGGTTGATGAGGACACCATTCTGGTCAATTACATCGCCACCCATGGTGAAGGTCACTGGAATTCCCTCGCACCATCTGCAGGTTTGAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCTCAGCACCTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTAAGGTGCGATGTCAACAGCAAACAGTTCAGAGACACGTTGCGTTATGTGTGGATGCCACGCTTACTGGAGCGGGTTCAGCCCACATCGCAAATTCTCCACCCTCAGATGGACCCGGGCCCAAGTGAAATTCAGGGCTTTCTTCAACAAACCGGGTTTCACTGTTTAGATTCGGTGACGGAGTGGGATAAAGGGAACCACCCCGCCGGTTCTTACTCGGACTCATCGTCCGTGGAGCTCCAAGTTCATTCCAATTCAGACCATAGCGATTCTTCGGGTTCGGGTTCGGGTTCGGGTTTCGATATGTGGGGAAGTTTGAATATGCAGATGTTGGAAGAAGGAAACGGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGACCTCGAATTAAAATACAGTTCCCTTCCGTGA 804 0.5 MDANCGSLVETQAKMRHSENEMLGLRKGPWTVDEDTILVNYIATHGEGHWNSLAPSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKQFRDTLRYVWMPRLLERVQPTSQILHPQMDPGPSEIQGFLQQTGFHCLDSVTEWDKGNHPAGSYSDSSSVELQVHSNSDHSDSSGSGSGSGFDMWGSLNMQMLEEGNGGGESLESLWNDLELKYSSLP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01428 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Phco6g01428 267 MobiDBLite consensus disorder prediction 197 230 - -
Phco6g01428 267 MobiDBLite consensus disorder prediction 200 230 - -
Phco6g01428 267 Gene3D - 84 125 - -
Phco6g01428 267 CDD SANT 84 123 IPR001005 -
Phco6g01428 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco6g01428 267 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Phco6g01428 267 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Phco6g01428 267 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Phco6g01428 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Phco6g01428 267 FunFam Myb transcription factor 27 79 - -
Phco6g01428 267 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Phco6g01428 267 SMART sant 79 127 IPR001005 -
Phco6g01428 267 SMART sant 26 76 IPR001005 -
Phco6g01428 267 CDD SANT 29 74 IPR001005 -
Phco6g01428 267 Gene3D - 27 79 - -
Phco6g01428 267 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Phco6g01428 267 FunFam MYB transcription factor 84 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01428 Phco-Chr6 14507655 14508662 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01428 Myb_DNA-binding 2e-13 CL0123