Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01401 ATGGAGGCTAGATTTGGTGCGGAAGCTTATCATCTTTTTGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCGGAGTGGGATTTGAATGATTGGAGATGGGATGGCGATCTGTTCATCGCAAGCCGGTTGAATCCAGTGCCAGCGGATGGTGTGGGAGTGGGACAGCAATTTTTCCCTCTAGGGTCTGGGATCCCGGTGGCCGGAGGTCCCTCCAACAGTTCTTCCTGCTCTGAGGAAGTAGATCCTAGGGATCCCATGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTTTGAATGAGGAAGCGGGTACTCTTAGTTTAAAGCTTGGTGGGCATGCTTCTGCAGTGGTGGATAGGGAAGTTGCGATCTGGGATGGTATGAATGGGAAGAAGAGTAGAGTATCTGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTAAGCAAAGCTAAGGATTATCACAGACGACATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCACTTGTCGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAGTTTGATGAGGGAAAGAGAAGCTGCAGAAGACGCTTGGCAGGACATAATAAACGAAGAAGGAAAACAAATCATGAACCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGCGAGCAAGGGGGTAAGAACATTTCTAACCTTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGGCGATTCATCAAGGAAGTCAGAGATGGTCTCCAATGGTTCTCAAGGTTCTCCAACTGTTACAAGACAGCATGAAGCTGTGTCCATGGCTAAACTGCAGCTACAAGTTATCCATGCACATGATGTTAGGGCCTCTGATCAGCAAATTACATCTTCTATAAAGCCCAGCATGTCAAACAGTCCACCGGCATACTCAGAAGCCAGAGACAGTACTTCTGGACAGATCAAGATGAATAATTTTGATTTAAATGACATATATATTGACTCAGATGATGGGATGGAAGATCTAGAAAGATTGCCTGTCTCAGCAAATCTTGTAACTAGCTCTCTTGATTACCCATGGGCACAACAAGATTCTCATCACTCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCTTCTGCCCAGTCTCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTTAAGCTCTTTGGTAAAGAGCCCAATGATTTTCCTCTTGTACTTAAAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATTCGGCCCGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGACACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCACCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCCTTCAGAAGTAACAACTATAGCAAGATTTTGACCGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAGTTTTCTGTTAAGGGTGTCAACCTTATGTGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATGTGGTCTGTGAAGATGCTCATATGTCAATGGATCAGTGCGCCAAAGAGCCTGATGAACTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGACGAGGATTTATTGAGATTGAGGACCAGAGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAAATAAGTGAAACTGACCCAGATATTGAAGGGACTGGAAAAGTTAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTCACTTGAATTCTAGTGTTGATCTCTATCCATTGAAACGGTTCAAGTGGCTTATGGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTGAAAAAACTTCTAAATCTACTGCTTGATGGAACTGTAAATATAGGCGATCATCCTTCCCTGTATCTTGCACTTTCAGAGATGGGACTCCTTCACAAAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTTTTGGGATATGTTCCTGAGAATATTTCAGATGAACTAGGACCTGAAGTCAAGGCTCTAGTTGATGGAGAGAACAAGACCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCCGAGGATGTGCTCGATGCTTTAACTAATGATCCTTGCATGGTTGGAATTGAAGCATGGAAAAATGCTCGTGACAGCACAGGCTCTACACCTGAGGATTATGCACGTTTACGTGGTCATTATGCTTACATTCACTTGGTGCAGAAGAAAATTAACAAGAGACATGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGTAACACGACAGAGACCAATACAAACCAGAAGCTGAATGAGGCATCCTCTAGCTTTGAGATTGGAAAGCCTGCAGTAAGGCTTAGCCAAGGGCCCTGTAAACTCTGTGACAGTAAAATGTCCTGCAGAACCGCAGTAGGGAGGTCTATGGTATACAGACCTGCAATGCTCTCAATGGTAGCCATAGCTGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAGAGCTCTCCCGAAGTAATATGTATGTTCCGACCCTTCAGATGGGAAACGTTGGACTTTGGAACAAGCTAA 3033 0.4408 MEARFGAEAYHLFGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQQFFPLGSGIPVAGGPSNSSSCSEEVDPRDPMGNKEGDKKRRVIVLEDDGLNEEAGTLSLKLGGHASAVVDREVAIWDGMNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEPVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGGKNISNLLREPENLLREGDSSRKSEMVSNGSQGSPTVTRQHEAVSMAKLQLQVIHAHDVRASDQQITSSIKPSMSNSPPAYSEARDSTSGQIKMNNFDLNDIYIDSDDGMEDLERLPVSANLVTSSLDYPWAQQDSHHSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLKAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLMCPATRLMCALEGKYVVCEDAHMSMDQCAKEPDELQCIQFSCSVPVMNGRGFIEIEDQSLSSSFFPFIVVEEEDVCSEICTLEPLLEISETDPDIEGTGKVKAKNQAMDFIHEMGWLLHRSQLKLRMVHLNSSVDLYPLKRFKWLMEFSMDHDWCAAVKKLLNLLLDGTVNIGDHPSLYLALSEMGLLHKAVRRNSKQLVELLLGYVPENISDELGPEVKALVDGENKTFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRHGAAHVVVEIPSNTTETNTNQKLNEASSSFEIGKPAVRLSQGPCKLCDSKMSCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWETLDFGTS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01401 1010 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Phco6g01401 1010 Pfam SBP domain 156 229 IPR004333 GO:0003677
Phco6g01401 1010 MobiDBLite consensus disorder prediction 422 455 - -
Phco6g01401 1010 MobiDBLite consensus disorder prediction 351 379 - -
Phco6g01401 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 897 IPR044817 GO:0003677
Phco6g01401 1010 MobiDBLite consensus disorder prediction 314 331 - -
Phco6g01401 1010 MobiDBLite consensus disorder prediction 73 98 - -
Phco6g01401 1010 MobiDBLite consensus disorder prediction 350 379 - -
Phco6g01401 1010 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Phco6g01401 1010 MobiDBLite consensus disorder prediction 286 331 - -
Phco6g01401 1010 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Phco6g01401 1010 MobiDBLite consensus disorder prediction 220 244 - -
Phco6g01401 1010 SUPERFAMILY Ankyrin repeat 778 896 IPR036770 -
Phco6g01401 1010 Gene3D - 747 930 IPR036770 -
Phco6g01401 1010 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01401 Phco-Chr6 14175980 14182469 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco6g01401 SBP 4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01401 6 14175980 14182469 Phco6g01401 6 14175980 14182469 ECH