Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01399 ATGAGTTGTTTCAGCTGTTGCGAGGAGGATGAACTCCAGAAGTCTGCTGAAAGTGGAGGACCCTATGTAGTAAAAAACCCAGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGCACTCAGCCGGTTAAAGCTCAGCCCATTGAAGTTCCAAATATACCAGTAGATGAACTAAAAGATGTTACAGATAACTTTGGTCAAGATGCTCTGATTGGAGAGGGGTCATATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCCGCAATCAAGAAGTTGGATGCCAGTAAACAGCCTGATGAGGAATTTTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCGGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGATCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCAGTTTTGTCATGGGCACAAAGAGTAAAGATTGCTGTAGGGGCGGCAAGAGGACTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGTTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAATCAAGCTCCGGACATGGCTGCGCGTCTTCATTCTACTCGTGTCCTGGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGCGTTGTCCTTCTGGAACTTCTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTTTGTGTGCAGTATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGCTGGCTGCAAGACCTGGACCTGCCGGTGAAACACCAAATTAA 1086 0.4383 MSCFSCCEEDELQKSAESGGPYVVKNPAGNDGNYHASETAKQGTQPVKAQPIEVPNIPVDELKDVTDNFGQDALIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVRLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLAARPGPAGETPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01399 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01399 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Phco6g01399 361 PIRSF ILK 7 352 - -
Phco6g01399 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Phco6g01399 361 MobiDBLite consensus disorder prediction 18 47 - -
Phco6g01399 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01399 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Phco6g01399 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 351 - -
Phco6g01399 361 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Phco6g01399 361 SUPERFAMILY Protein kinase-like (PK-like) 47 345 IPR011009 -
Phco6g01399 361 CDD STKc_IRAK 75 348 - -
Phco6g01399 361 MobiDBLite consensus disorder prediction 32 46 - -
Phco6g01399 361 FunFam pto-interacting protein 1 145 356 - -
Phco6g01399 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Phco6g01399 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01399 Phco-Chr6 14140238 14142723 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Phco6g01399 PK_Tyr_Ser-Thr 1.9e-46 CL0016