Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01380 ATGGAAAACCACCACCAAATGCAACAACACCGTCATCAATTCATGAATCTAGATCCTACAACCGTCAACACCGGACAGCATCACGATCCTTCCGTCAAAGAACTGGATTTTTTCTCATCAACTTCACCGTCCAAGAACACTCATACTGATAACTCAAATACTCATTCAAACATTCCTAAAGAGAACGGATCACAACCTCTTTTCACTGATCAGTTCGTCAATACCACGCTGAATTTAATGTGTCCGAGTCAGACTGATGAATTGTCAAGATCAACACCAACAGATCAAAATCCTAAATCTCCTCCGCTGAATACACTCGAAAAGGAGTTTCTGAGACTACAAGAAGAGAATTACAAGTTGAGAACTATGTTGGACCAAATCACCAAAAACTACCACCATCTGCAATTTTTCATTGCTATGCAGAAGCAAAGGCCGTATCAGAAGGTGGAGAAAAATGAGAATATGTCTGGTCGACATTTATTGGACCCACAATCATGCACCAAATTAGACGCTAAAGTTGCTACATCACTCTCCGATGATAAATCTGGTCAAGAGGCTCATCATGATCGTGTAGAAGATGTTGTTGAACAATTGACCTTACAGAGTTTGGGATCATCCAAGTGTCCCAAGTTTGAAGAATATAAGCCCGGTGAGCCTCCTTTCAGAAGAACCAGAGTTTCCGTGCGTGCAAGATCAGAAGCTCCGGTGATTTGCGATGGATGTCAATGGAGGAAATATGGGCAAAAAATATCCAAGGGTAATCCCTGTCCTCGTGCCTACTATCGTTGCACCATGGCAGTAGGATGCCCGGTTCGTAAACAGGTGCAAAGATGCACAGAGGACATGAGTGTGTTGATAACAACTTACGAAGGCAATCATAACCACCCTCTTCCACCTTCAGCCACGGTCATGGCCAATTCTACCTCAGCAGCTGCAGCTATGTTATTATCTTCTTCGTCAGGTTCAACAACTAGTAACGAATCTCTAAACAACAGTGTAGGAGTACTCTCTTCCATGCCCTACATCCCAATGCCAACCCTCTCAGCCTCTGCACCATTTCCCACTATCACCCTTGACATGACCACCAACCCTACGCAACTGCATCGGGACACCTCTTCTGCACTCACCTCCTCTCTTCCATTGCTTGCAACTACTTTTCCTCAGCTACTAGGGCACCCTATCTTCTTCCCTCACAAAATCCAACATTCACTAGGCCAAAGACAACCTTCGTTTATGACCGATGTGATGACTGCAGCTGTTGCTTCGAATCCAAATTTCACTGTAGCATTAGCAGCAGCTATCTCGTCAATTATTGGAGCTCCTAGAGGCAATGATGGAAATAATAACAATAGTAACAGTGAAAATGTTCTTGCCCTTGGGACATCTATGTTACCTGGATCCACTTAA 1407 0.4385 MENHHQMQQHRHQFMNLDPTTVNTGQHHDPSVKELDFFSSTSPSKNTHTDNSNTHSNIPKENGSQPLFTDQFVNTTLNLMCPSQTDELSRSTPTDQNPKSPPLNTLEKEFLRLQEENYKLRTMLDQITKNYHHLQFFIAMQKQRPYQKVEKNENMSGRHLLDPQSCTKLDAKVATSLSDDKSGQEAHHDRVEDVVEQLTLQSLGSSKCPKFEEYKPGEPPFRRTRVSVRARSEAPVICDGCQWRKYGQKISKGNPCPRAYYRCTMAVGCPVRKQVQRCTEDMSVLITTYEGNHNHPLPPSATVMANSTSAAAAMLLSSSSGSTTSNESLNNSVGVLSSMPYIPMPTLSASAPFPTITLDMTTNPTQLHRDTSSALTSSLPLLATTFPQLLGHPIFFPHKIQHSLGQRQPSFMTDVMTAAVASNPNFTVALAAAISSIIGAPRGNDGNNNNSNSENVLALGTSMLPGST 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01380 468 MobiDBLite consensus disorder prediction 18 67 - -
Phco6g01380 468 MobiDBLite consensus disorder prediction 35 67 - -
Phco6g01380 468 MobiDBLite consensus disorder prediction 83 103 - -
Phco6g01380 468 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 88 453 IPR044810 GO:0003700
Phco6g01380 468 FunFam probable WRKY transcription factor 31 222 299 - -
Phco6g01380 468 SUPERFAMILY WRKY DNA-binding domain 231 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01380 468 MobiDBLite consensus disorder prediction 83 105 - -
Phco6g01380 468 Coils Coil 103 123 - -
Phco6g01380 468 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01380 468 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01380 468 MobiDBLite consensus disorder prediction 442 468 - -
Phco6g01380 468 Gene3D WRKY domain 222 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01380 468 Pfam WRKY DNA -binding domain 239 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01380 Phco-Chr6 13909965 13912476 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco6g01380 WRKY 3.5e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01380 6 13909965 13912476 Phco6g01380 6 13909965 13912476 ECH
Phco2g02506 2 54981178 54984840 Phco6g01380 6 13909965 13912476 PCT