Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01371 ATGGACTTTCCGGTTCAAAGGGATTCTGCTCTGGACAATTTACAACCAAGTTCTCATCAAAGTAGTGAGTTTGCAAAGGCTGCTTCTAGCACCAAAGGTCCTGAGCATTCCTCAGTGATAAACTCATCACATGGATCAAAGGGAAGCCAAAACCTTTTGATTTCTGATGCATCAAACCTTGTTCCTGATGAGCAATCTCCAGCTGTTGGTCATAATAGTGCTCTTAGTATTCGCGGATCTCGGGGTCATCAGCGAGTCTTGATTAACTTGGTGCAGAATGGCAAAGAAGCAGAAGATGTAGTGAAGGAAAAGCCTGCTCGGGAAGGCACCGGAGTGAAGAGAAGTAGGAATACAGAAGTTCATAATTTGTGTGAAAGGAAACGAAGAGATAAGATCAACAAGAAGATGCGTATATTGAAGGAGCTCATACCCAACTGCAACAAGACGGACAAAGCTTCAATGCTTGATGATGCCATTGAATATCTTAAGACCCTCAAGCTTCAGTTAGAGATTATGTCAATGGGTGGTAGATTTTCCATGCCTTTGATGATGTTACCTAATGCTGCTCATCTTATGATCAACGCACCCCATTTGCACCAGTTAATGGGAGTTGAAATGGGGTTAAGGCCAGGCACAACCATCCCTTGCCGTCTGCCTCAGTTCCCTATGACACCTTTGCCTGCAATCACTGACAACAGAGCTCAAATGTTTCGTTTCCCTAACCAAGTGCCCACCATGCACACTTCTCATGCACCTTTCATTCCAATGGTTGGAAATCCTTCTACACAAACCCCTCTTGCAACTGGCACAGCTACAAACATGGCTGAAAACCCTTCCCAGTTAGCCACTCTATTGGCCTTACTCTCCAAGAACTCATCTCGTGGAGAAGCTGAACATGCAACAAAACAACCATTGAATCAGGTTTCCCCTCACCACTAG 939 0.4473 MDFPVQRDSALDNLQPSSHQSSEFAKAASSTKGPEHSSVINSSHGSKGSQNLLISDASNLVPDEQSPAVGHNSALSIRGSRGHQRVLINLVQNGKEAEDVVKEKPAREGTGVKRSRNTEVHNLCERKRRDKINKKMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLEIMSMGGRFSMPLMMLPNAAHLMINAPHLHQLMGVEMGLRPGTTIPCRLPQFPMTPLPAITDNRAQMFRFPNQVPTMHTSHAPFIPMVGNPSTQTPLATGTATNMAENPSQLATLLALLSKNSSRGEAEHATKQPLNQVSPHH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01371 312 Gene3D - 112 173 IPR036638 GO:0046983
Phco6g01371 312 MobiDBLite consensus disorder prediction 292 312 - -
Phco6g01371 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Phco6g01371 312 PANTHER TRANSCRIPTION FACTOR PIF3 20 307 IPR044273 GO:0003700|GO:0006355
Phco6g01371 312 Pfam Helix-loop-helix DNA-binding domain 120 165 IPR011598 GO:0046983
Phco6g01371 312 MobiDBLite consensus disorder prediction 298 312 - -
Phco6g01371 312 MobiDBLite consensus disorder prediction 10 51 - -
Phco6g01371 312 SMART finulus 122 171 IPR011598 GO:0046983
Phco6g01371 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 175 IPR036638 GO:0046983
Phco6g01371 312 FunFam Basic helix-loop-helix transcription factor 111 174 - -
Phco6g01371 312 CDD bHLH_AtPIF_like 116 178 IPR047265 -
Phco6g01371 312 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01371 Phco-Chr6 13832541 13833976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g01371 HLH 9.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01371 6 13832541 13833976 Phco6g01371 6 13832541 13833976 ECH
Phco2g02509 2 55016533 55018920 Phco6g01371 6 13832541 13833976 PCT