Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01343 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTGGATTACATCACTAAACATGGTCATGGCTGTTGGAGCTCAGTCCCCAAACTCGCTGGTCTGCAGAGGTGTGGGAAGAGCTGTAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAGGAGAACATGATCATTGAACTTCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACCTATGGAACTCGTGCCTCAAGAAGAAGCTGAGGCAAAGAAGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAACGGCAAGGACATTCCACCCTCAACCGACAAAAGCAATCAGAAAGCCTCATTGGGATCCCATGAAGTGAGTTTGGCTGATCAGCCAGCAAAAGCCTTGTTGCCTTCTTCAGAGGGATACCCTCTTGAAGTTTCTACTAGTTCAACCCAGAAACTATTCCTAGATAAGTTTGGTGGCAACAGTTGCAAACCCTCTGATGTGGTAGGACCGTACTTCTCCTTTCAGCACTTGAACTATGGAACAACAAACATGGACCTCTCTGCAAACTCCAATGACTCTCTTTGTTTCATTCCACCCTGCACTTCTTCAGACCTTAACAATTCCACCATAACCTCCTCTATGCTGCATTCAATTTTCCCAACACACGTGAAGATCCAATCTAATGACAACCCTTCCATACCCTCTGATGCGCTTCAAAACTGGGAATCCAACAACACAAACAAAAGCAATGGGAGTATGCAGTTTCAAAGCAGCACAAACTTCCTTGACAACACGTGGGGGATGGTAGAGTCTACCAAGGTTAACATTAACAAAGATGCTCAAGTTCCCCTTCAAGCAGAACAAGAGGATCTAAAATGGTCCGAGTATCTTAACACCCCATTTATTCAGGGAAACACACCGCAGAATCAAATCCAAACCTCTCAGTCTATCTACAGTGAGGTCAAACCAGAAACAGAATTCATAACAGACGAGTCATGTACTAGTTGGCACCATCAGCCACCAGCTTTTCAACTTTCCGATATAAATAGCAATGTTCTGCAGAGATTTTCAGTAACTTTTGGACAAACCCTTTAA 1194 0.4472 MGRHSCCYKQKLRKGLWSPEEDEKLLDYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRSIDPNTHKPLSEVENGKDIPPSTDKSNQKASLGSHEVSLADQPAKALLPSSEGYPLEVSTSSTQKLFLDKFGGNSCKPSDVVGPYFSFQHLNYGTTNMDLSANSNDSLCFIPPCTSSDLNNSTITSSMLHSIFPTHVKIQSNDNPSIPSDALQNWESNNTNKSNGSMQFQSSTNFLDNTWGMVESTKVNINKDAQVPLQAEQEDLKWSEYLNTPFIQGNTPQNQIQTSQSIYSEVKPETEFITDESCTSWHHQPPAFQLSDINSNVLQRFSVTFGQTL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01343 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco6g01343 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco6g01343 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco6g01343 397 PANTHER MYB DOMAIN PROTEIN 55 1 312 - -
Phco6g01343 397 FunFam Myb transcription factor 11 67 - -
Phco6g01343 397 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco6g01343 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco6g01343 397 CDD SANT 17 61 IPR001005 -
Phco6g01343 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco6g01343 397 MobiDBLite consensus disorder prediction 139 154 - -
Phco6g01343 397 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Phco6g01343 397 Gene3D - 68 138 - -
Phco6g01343 397 Gene3D - 11 67 - -
Phco6g01343 397 SMART sant 66 114 IPR001005 -
Phco6g01343 397 SMART sant 13 63 IPR001005 -
Phco6g01343 397 MobiDBLite consensus disorder prediction 119 133 - -
Phco6g01343 397 CDD SANT 69 109 IPR001005 -
Phco6g01343 397 MobiDBLite consensus disorder prediction 119 155 - -
Phco6g01343 397 FunFam MYB transcription factor 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01343 Phco-Chr6 13552465 13553967 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g01343 Myb_DNA-binding 1.7e-15 CL0123