Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01339 ATGCCTCTGTACGAGTTATACCGTCTGGCTAGAGAGAAGCTTGGTACAGAGAATAACGGCACACGTGCATCTGATCAATGTTCCTCACCTGAAAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCTAGTAGAGTTAGAAGGAGCCCATCTTGCAGAAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCAAAGGGTAGAGACAAAGATGTAGGATGTGGTGCCAGCAAGATGGGAAAATTTAGAGATTTAGAATCTGGATTGAGTGAAATTTCAATGTCGGTGCCGTCCCGTGAAATTGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTTGATTACGCAGCAATGGATGGTTCTATGCAACATGACTATGGTTCTGATTTCCTCCCTACCTCAACTAGTTTTACTCTATTGGATAAAAAAAGTAATACCAATATAGCTTTGAGGGATTCTCATAAAACTTCTGAAGAGCAAGGGAATGTTTTCAAGGGTTCTTCAGATGAACAGGTTGAGAGTACCGGACCCAAATCTAGCACCAGTCAGTTATACCCCCCATCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAGCGTCAGATATAACTGGAAATAACAATACCAGTAATGCAAACCAGGATGCCACTTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGTCCAAAGGGGAAGAAACAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTCGCTAGGCCTGCTGCAATGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGACCAGACAGTATGGAAATTAAGAATACAGGTGCAGCCGCAACTAGCAGCAATCCTCATGAATCAATTGTTATTGATTCAAGTGGTGAATGTTCGAAGGAACTGACCATGCACTGTCAGCAGGTTGTGGATCAATCCAGGTCCAGGACTGATTTGAACACTTCGCTGTCGAAAGCTGTTGAACAGAATGCAGTACTTTCTAAGCATTCAGAGCCTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTTCCGATCAAGTTCTTGGTGACAGTGGTGCTAAAGGGCAGACAACTACTGAAAAAAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAACGGTGCAGACAGAGGTTCAGATGAGCCAAATCAAAATTTGAAGCGAAAAAAAAAAGAGACCGATGACTCTGAGTGCCATAGTGAAAAGACAATTTACATGAAGGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGGCAGCTGGAGGGCGTGGAGGTGCAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTGGACGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCGATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCAAATGCATGCACCACATATGGCTCCATTTTCACCTGTGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGAGTGGGAATGCCTGACATGAATGGTGGATCTTTAAGATTCCCTATGATTCAGGTGCCCCAGATGCAAGGAAGTCATATCCCTCTTGTCCATGTGTCTGGACCTACTGCTTTACATGAGATGGCCAGATCAAATCTTCCAGGGCTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCGCGAGCTCCCATGTTGCGAGGACCTATCATGAATTCACCAGCTCTGGGGCTACATGCCTGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAATGTGGGCCCACTACTTAAGCAAAGCAATGGTGGCCACGACTCAACAAGTCAGATGCCTACACATAGTGAGGCAGCTGTTGTTCGATTTGAGCAATCTGCTTTGGTTCATAGTAGCGGTCATACCTCTGAGGCTAATGCCAATGGAGCTGTTAATCCTTGCACATAA 2175 0.4446 MPLYELYRLAREKLGTENNGTRASDQCSSPENDFFELVWENGQISSQGQSSRVRRSPSCRSLPSHCLPSHSPKGRDKDVGCGASKMGKFRDLESGLSEISMSVPSREIDFCQDEDVLPWFDYAAMDGSMQHDYGSDFLPTSTSFTLLDKKSNTNIALRDSHKTSEEQGNVFKGSSDEQVESTGPKSSTSQLYPPSLHHCQTSFVSSRSRASDITGNNNTSNANQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLSSARPDSMEIKNTGAAATSSNPHESIVIDSSGECSKELTMHCQQVVDQSRSRTDLNTSLSKAVEQNAVLSKHSEPACNESSTKIDQISDQVLGDSGAKGQTTTEKSMEAAVASSSVCSGNGADRGSDEPNQNLKRKKKETDDSECHSEKTIYMKDAEEESAGVKKAAGGRGGAGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQQMHAPHMAPFSPVGVGMHMGYGMGYGVGMPDMNGGSLRFPMIQVPQMQGSHIPLVHVSGPTALHEMARSNLPGLGLPGQGHPMPMPRAPMLRGPIMNSPALGLHACGSSGLVETVDSASASGLKDQMPNVGPLLKQSNGGHDSTSQMPTHSEAAVVRFEQSALVHSSGHTSEANANGAVNPCT 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01339 724 SMART finulus 473 522 IPR011598 GO:0046983
Phco6g01339 724 CDD bHLH_AtPIF_like 467 529 IPR047265 -
Phco6g01339 724 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 527 IPR036638 GO:0046983
Phco6g01339 724 Gene3D - 462 525 IPR036638 GO:0046983
Phco6g01339 724 MobiDBLite consensus disorder prediction 416 452 - -
Phco6g01339 724 MobiDBLite consensus disorder prediction 354 472 - -
Phco6g01339 724 MobiDBLite consensus disorder prediction 354 415 - -
Phco6g01339 724 MobiDBLite consensus disorder prediction 157 260 - -
Phco6g01339 724 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Phco6g01339 724 Pfam Helix-loop-helix DNA-binding domain 471 517 IPR011598 GO:0046983
Phco6g01339 724 FunFam Basic helix-loop-helix transcription factor 462 525 - -
Phco6g01339 724 PANTHER TRANSCRIPTION FACTOR PIF3 1 688 IPR044273 GO:0003700|GO:0006355
Phco6g01339 724 MobiDBLite consensus disorder prediction 167 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01339 Phco-Chr6 13504687 13508100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g01339 HLH 7.9e-14 No_clan