Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01335 ATGACTAGGCAGAAAGTGAAACTTGCCTATATCAGTGATGTGACTGCAAGAAAATCCACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACGATTCTGTGTGGGATCCCAGCCTGTGCTATTATTGCAAGTCCTTTTGAAGCTAAGCCGGAGATTTGGCCAGATCCAGAGGGAGCCAAGAAAGTGATTCAGAAGTATTTGGATGCATCTGTGATAGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTCATGCAGAAGATTGCCAAAGCCCAGGAGCAACTGAAGAAGCTGCGTCAGGAGAACCAAGAGAAGGAGAAGATCTTGTCCATCTTCAAGTACATGCAAGGTGAAGACCTCCCAACTGATGTTCAAGAATTGAAACAACTCAACAAGCTCATTCAGAACAGTATGAAGGAAACTAAGAACAAGATGGATGAACTCAATTGTGAGTCTATATAG 477 0.4256 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASPFEAKPEIWPDPEGAKKVIQKYLDASVIDESKNVNQESFLMQKIAKAQEQLKKLRQENQEKEKILSIFKYMQGEDLPTDVQELKQLNKLIQNSMKETKNKMDELNCESI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01335 158 Gene3D - 13 156 IPR036879 GO:0003677|GO:0046983
Phco6g01335 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco6g01335 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco6g01335 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco6g01335 158 Coils Coil 86 113 - -
Phco6g01335 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Phco6g01335 158 FunFam Agamous-like MADS-box protein AGL92 13 108 - -
Phco6g01335 158 PANTHER MADS BOX PROTEIN 3 151 - -
Phco6g01335 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phco6g01335 158 Coils Coil 129 156 - -
Phco6g01335 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01335 Phco-Chr6 13449551 13450027 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco6g01335 SRF-TF 1.2e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01335 6 13449551 13450027 Phco6g01335 6 13449551 13450027 ECH