Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01333 ATGACTAGGAAGAAATTGAAACTTGCTTTTATCTCTAATGACATGGCAAGGAAAACCACATACAAGAGAAGGAAGAAGGGTATCATGAAGAAGGTGGATGAACTCGCCACCCTCTGCGGGATCTCAGCTTGTGCTATAATTTCTAATCCTTTTGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGGAGTCAACAAGGTGATGGAGAGGTTCAAGAATGCATCTGTGCTAAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGATGCAAAGGATCGTGAAAGCACAAAATGAATTGAAGATGCAACGTAAAGAGAACTACGAGAAGGAGATTACCTTGTCCATGTTTCAGTTCATGCAAGGTGAAAACCTGCCAAATACTGTTGAAGAAATCAAAGAAATCCACAAAATGATTGAGAAAAATATAAAAGAGATTGAGAATAAGTTGGCTGCACTCCACTGTGAGTCATGA 474 0.3966 MTRKKLKLAFISNDMARKTTYKRRKKGIMKKVDELATLCGISACAIISNPFDSETEVWPNPEGVNKVMERFKNASVLNKSRNVNHESFMMQRIVKAQNELKMQRKENYEKEITLSMFQFMQGENLPNTVEEIKEIHKMIEKNIKEIENKLAALHCES 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01333 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Phco6g01333 157 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Phco6g01333 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco6g01333 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Phco6g01333 157 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Phco6g01333 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco6g01333 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco6g01333 157 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Phco6g01333 157 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco6g01333 157 PANTHER MADS BOX PROTEIN 3 150 - -
Phco6g01333 157 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01333 Phco-Chr6 13412623 13413096 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco6g01333 SRF-TF 2.4e-14 No_clan