Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01312 ATGCCAGCGAAGAAATATTACTGCGACTACTGCGACAAGCAATTCCAAGACACACCAGCCGATCGGAAACGACACGTCCAGGGTATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCACCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAACACTACACAACACGCTCCAATCCCCTCACCAGTTGTGCATGCAGGAAATGTGGTAGGAGTGCCATTGGGAAATTTGCCCCCGTCGCTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG 378 0.5238 MPAKKYYCDYCDKQFQDTPADRKRHVQGIQHHQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNNTTQHAPIPSPVVHAGNVVGVPLGNLPPSLQPPPEAGYPHLPFVDWG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01312 125 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Phco6g01312 125 Gene3D Classic Zinc Finger 3 49 - -
Phco6g01312 125 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Phco6g01312 125 Gene3D - 50 95 - -
Phco6g01312 125 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Phco6g01312 125 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Phco6g01312 125 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
Phco6g01312 125 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Phco6g01312 125 PANTHER NUCLEASE-RELATED 1 125 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g01312 zf-U1 8.4e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01312 6 13207660 13208235 Phco6g01312 6 13207660 13208235 ECH