Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01294 ATGGAGAAGAAAGAGGAGATAACGCTTCCATTGCCATTCCAGACCCATCTCAAGGGCCTTCTTAATGTTTCCTCCACTGCAAGTTCTTCTGTGTCCCACAAACAACACTGTTCTCCGGCTGATGACTCCGACAGCTTCTATGATAAACTGGTTGACTTGTTGGACTCTTCTGGGCTCACTCTCATTTTCAATGTCCGAGAAACATTGCTAGACTTGTACCTGTTTTACCTGGAGGTGACAAAAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAGTGGGGTGAAGTTGTCATAGCCTTGAAATTGGAAGGGAATAGTGTGCAGTTATGTGCTCAAGTAGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGAAGTCCTACAAAGCAAGCTCCCCTATCTATCAGCAGTGAAGGTCCACTTAGGAAGAAGAGGATCTCAACTGCAAGTTTGCCTCATATAATGGATAGTAAAGATAGTCAGAAGAAGGCCACGGAAATGTCCAAGCAATACTCTTGCCACATGACAGGGCCTGGGTATGTGCAACAGCCTGTGTTTTTACCAACACCTTCGAAAGAAAAAAAGAAACGCCGAGGTGCCCCAGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCACGGTTGAAAACTTGTAATCAGGCCTTAGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACTATGTCTGATATTGCGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGTCACAGTAAACAGCAGAAAACCGAAGATACCAGGGAAGAGAAGTGGTCTAGTATGTGTGGTGATTACCATGTAACTTTGCATCCTGAGGCAGATGACTGTTAG 921 0.4365 MEKKEEITLPLPFQTHLKGLLNVSSTASSSVSHKQHCSPADDSDSFYDKLVDLLDSSGLTLIFNVRETLLDLYLFYLEVTKRGGYHQVGREKKWGEVVIALKLEGNSVQLCAQVERLYSHLLYQFEQLYFYRSPTKQAPLSISSEGPLRKKRISTASLPHIMDSKDSQKKATEMSKQYSCHMTGPGYVQQPVFLPTPSKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNQALDGKILSMAIHSWRTMSDIAKQPYVEESKKNKEEIKEAMVSHSKQQKTEDTREEKWSSMCGDYHVTLHPEADDC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01294 306 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Phco6g01294 306 SMART bright_3 41 131 IPR001606 GO:0003677
Phco6g01294 306 MobiDBLite consensus disorder prediction 267 287 - -
Phco6g01294 306 SUPERFAMILY HMG-box 191 272 IPR036910 -
Phco6g01294 306 SUPERFAMILY ARID-like 35 136 IPR036431 GO:0003677
Phco6g01294 306 Pfam HMG-box domain 210 274 IPR009071 -
Phco6g01294 306 Coils Coil 257 277 - -
Phco6g01294 306 CDD HMG-box_SF 212 266 - -
Phco6g01294 306 Gene3D High mobility group box domain 196 293 IPR036910 -
Phco6g01294 306 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 38 284 - -
Phco6g01294 306 SMART ARID_2 37 126 - -
Phco6g01294 306 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Phco6g01294 306 Gene3D - 23 150 IPR036431 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco6g01294 ARID 1.3e-10 CL0123