Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01292 ATGGCCAGAATTTCTTCCGAGGAGAAAGTTTTTTGTCAATTTCCATCAAATCTAAGGGTTCTTGCCATTGACATTGACCCTTTAGTTCTTGAATTCATCAAGAAAATATGCAATGAATGTTGTTATCAAGTTATGACATGCACAGAATTGCTATGTGCGGCTGATATTTTTAGGGACAAAACAGTGAGTTTTAATTTGGTGCTGATGGAGGTTCATATGCCAAACATGGATGGATATGAATTCCTTGTGAACCAGAAAATAGATGTTCCTGTCATCATGATGTCTTTTGATGATGATAAGAAATCTGTAATGAAGGCTATTAAACTTGGAGCTTGTGATTATTGGATTAAGCCTTTGCATGAGGATCGAATCAAGAATATGTGGACACATGTTGTTAGGAAGTCCATGAGTGAGAAGAAGATGCAGAAAGACATTATTGGCAACTTGGAAGATGATGATCAGAAAAGAATGATTAGTAGTGATGATTCTAATTCTATATTTGTTTTTTCTTCTAGTGGTGAAATTCCAAGAGAAGTTGATAATGTTGGTGAATCTGAGAGATGTGGCAGAAAGAAGGCTCGTATAGTATGGACATCAGAACTGCATCGTAAATTTGTTGAAGCTGTGGATCAAATTGGACTTGCTAATGTTGTGCCAAACAAAATTCTTGAACTCATGAATACGCCTGGTTTGACAAGAAACAATGTTGCTAGTCATTTGCAGAAATATAGAAATGTTTTGAAGGCAAAATCTGATAAAGAAAAACATAGTCAACAACAACTACTACAGAATGAGGTGTCAAGGACTATAACATCTACAAGAGCAGATCTTTATCCTGGTGTCACAGGTTTGGTCCCAAAAAGAGAGCACCAATGTGTCTCAGACATGCAACTGGATAACCATTTTCATTCAGAACAAGCTTTGGTTTTGGCACATGGTTACCCCTTCACTACCTGTCCTAACATTGTTATTCCCCAGAATTTTCCACACTCCATTGGGACTCTAGATGATGCATCTACACATGGAATATGGTCTTCATATAATACAGTGTTTGCTGAAAATCAAGCCATGCTGCAGAGAAACAATGACACATTGGAGCAACAACAACCAATGCATTTTATTTTGTAA 1128 0.3688 MARISSEEKVFCQFPSNLRVLAIDIDPLVLEFIKKICNECCYQVMTCTELLCAADIFRDKTVSFNLVLMEVHMPNMDGYEFLVNQKIDVPVIMMSFDDDKKSVMKAIKLGACDYWIKPLHEDRIKNMWTHVVRKSMSEKKMQKDIIGNLEDDDQKRMISSDDSNSIFVFSSSGEIPREVDNVGESERCGRKKARIVWTSELHRKFVEAVDQIGLANVVPNKILELMNTPGLTRNNVASHLQKYRNVLKAKSDKEKHSQQQLLQNEVSRTITSTRADLYPGVTGLVPKREHQCVSDMQLDNHFHSEQALVLAHGYPFTTCPNIVIPQNFPHSIGTLDDASTHGIWSSYNTVFAENQAMLQRNNDTLEQQQPMHFIL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01292 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 248 IPR017930 -
Phco6g01292 375 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 264 IPR045279 GO:0009736
Phco6g01292 375 SUPERFAMILY Homeodomain-like 190 248 IPR009057 -
Phco6g01292 375 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Phco6g01292 375 CDD REC_typeB_ARR-like 20 132 - -
Phco6g01292 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Phco6g01292 375 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Phco6g01292 375 SMART REC_2 18 128 IPR001789 GO:0000160
Phco6g01292 375 SUPERFAMILY CheY-like 16 143 IPR011006 -
Phco6g01292 375 FunFam Two-component response regulator 188 251 - -
Phco6g01292 375 Gene3D - 189 249 - -
Phco6g01292 375 Gene3D - 17 147 - -
Phco6g01292 375 Pfam Myb-like DNA-binding domain 197 244 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01292 Phco-Chr6 13002624 13004365 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco6g01292 Response_reg 3.4e-15 CL0304