Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01284 ATGGTTATGGAGTACCAGCGACAGTGGCATGGCAGTAGATGGTTGGAAGTAGAAGTGGAACTGAGAATAGTTATTGTTACTGATAGACCGTTTTTATTGGAAAAGAAAAGCAAGGTCTCGTCCCTTTCCAGGTGCCGTAATAGCTCCACTTTCTTCCCCTTCTTCCCCATCCTTCCTTTTCAACAACTCCCCTTACCCTTCTCTCTCACCGGATCACTCCAACAACACACAAAAACAACCTCAAACAATACAATCCTACACCTTCTCTTGTTGGGTTCTTCAAAGTTCGAGCTGATTTCCCTGCCTGTATTCTCACTTCGAAGAAACGTGCATGGGATATCGATGGAAAATTTTTTCAAGCTGAACTCTCTCCTATCTTGTTCCGAGGATGTTGTTAGAGAAGTCAACGTCAACGTTTCCGGTACCGCTGCATCTGAATTGAATCTAGGACTGGTGGCCAATAACTTCCTTCAGCTGGAAGAGCCAGAAAGTTCCGATATGTCGGAACGGTTCATCAAGACTCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCCGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAACCACCCAACGGATGCTCTTCGTGAGATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTACATAGATACACGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTGGCATTGCCACTGGATAACAACCGCTCAGATGAGGCAGCTGGGACATCAGAGGATGAATTCAGTTGGGAGAAGATGGAAGCAGTGGAAGGTCAGGAATCTTCTGGCTCCCGCCTCGGTGATCAAGAGCTTAAAGAAATGCTCCTTCATAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTAAAGAAAAGGAAAAAGGGTAAACTTCCAAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACGGGGCTGGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGCGCCATAGGAGGAGGACCTATGTAG 1257 0.4558 MVMEYQRQWHGSRWLEVEVELRIVIVTDRPFLLEKKSKVSSLSRCRNSSTFFPFFPILPFQQLPLPFSLTGSLQQHTKTTSNNTILHLLLLGSSKFELISLPVFSLRRNVHGISMENFFKLNSLLSCSEDVVREVNVNVSGTAASELNLGLVANNFLQLEEPESSDMSERFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARENHPTDALREIGDDPELDEFMESYCEVLHRYTQELSKPFNEATLFLCSIESQLSNLCKGTLALPLDNNRSDEAAGTSEDEFSWEKMEAVEGQESSGSRLGDQELKEMLLHKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGGGPM 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01284 418 Pfam ELK domain 313 334 IPR005539 GO:0003677
Phco6g01284 418 Gene3D - 331 403 - -
Phco6g01284 418 ProSiteProfiles ELK domain profile. 313 333 IPR005539 GO:0003677
Phco6g01284 418 ProSitePatterns 'Homeobox' domain signature. 371 394 IPR017970 GO:0000981|GO:0006355
Phco6g01284 418 SMART KNOX1_2 170 214 IPR005540 GO:0003677|GO:0005634
Phco6g01284 418 Pfam KNOX1 domain 172 213 IPR005540 GO:0003677|GO:0005634
Phco6g01284 418 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677
Phco6g01284 418 SMART HOX_1 335 400 IPR001356 GO:0003677
Phco6g01284 418 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677|GO:0006355
Phco6g01284 418 CDD homeodomain 345 397 IPR001356 GO:0003677
Phco6g01284 418 Pfam KNOX2 domain 221 267 IPR005541 GO:0003677|GO:0005634
Phco6g01284 418 SMART ELK_2 313 334 IPR005539 GO:0003677
Phco6g01284 418 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 128 403 - -
Phco6g01284 418 SUPERFAMILY Homeodomain-like 335 408 IPR009057 -
Phco6g01284 418 SMART KNOX2_2 217 268 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01284 Phco-Chr6 12886971 12891522 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco6g01284 KNOX2 1.9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01284 6 12886971 12891522 Phco6g01284 6 12886971 12891522 ECH
Phco2g02573 2 55563773 55568423 Phco6g01284 6 12886971 12891522 PCT