Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01261 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAAGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGACGGCAAAGAGGTATCTGACTATTATTGCTCCTCCTTTGATGGATGTGCATCAGAGGAAAGTTTGGGGAGTATTTTGGGAGAGGAGGAGGAGGAATTTGAAACGGTGAGGAATTTCAATAGATCCAAGGCAAAAAAAGGCACTGCTAGTAGGCGGAAAAATGCCAGTAAAAACTCGCACAAGGGGGGAAGGATTAAATATGTAGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGTGGAAGAAGAGGAAGAAGAAGAAGAAGAATACAAAGTGGAGGAGGAGGAGGAAATTCAAGAAGTGAGGAATTTAAATAGACCAAAGGCAAAAAATGGTGTACGCAGTAGGAAAAGAAGTGCAGGAAAAATCTCCCCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAGGAGGAAGAGAAGGAAGAGGTGAACGAAGGTGGAGATGACGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGTGGATGAGGATGATGAGTTTTTGCCTGAGGAAGAAGATTATTCAGATGAGGAAGAGGAAATGAGAGGGAGAAAGAAGAACAATGATAGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCAACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGCGAGGTTAAGGAAGAACGGAAAATGTGAAGATGATGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGGACAAGTAGGAGAAAACGGGGCCAGAAGAGAAAAAGGGTGCCTTTTTCAGATTCAGAAAATGCCTTTTCTGGTTCGTCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGCGGAAATTTGAGAAATAACTTGAGGAGTTCATTCCATCTGATAAACAACGAAGAGGTTGATGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGTAAGCAAGTATGTGGGATTTGTCTATCCGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGTTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATATCTGTGATTCCCCTGCACACACGTATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCTGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGTTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGACCACCCCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACATGATATCGTCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTCAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCGACATTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGACTTCCACCCCTGGCAGAACCACCAATGGTATTTCAGCTACCAGTTCCACTAGTAATTTATATAGCTCTCAAATTGATCAAAGTAGGGGAACTGCCACTCTTCATGCAAGGACACAGGATGTGGGAACATCGTACCACACATTTTTTGATGACAGGTTATGCAACAATACCTCTCCACTAATGCAGAATGGGCCATTATGGCCTGGACTTATAGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAGCATTGTCCCTGATGATGGCTTATCCTCTGCTGTCAGAGAAGAGACTAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAAAGCTTGTCTCAAAATATTGATTTAGGTCACAGTACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACAAGAACACTGAAGTTTGCAACGTGGCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGTTGGCGGGCCAACGAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCGTCCCAGTGGTTACGATTAGGTCTATAG 2592 0.436 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGKEVSDYYCSSFDGCASEESLGSILGEEEEEFETVRNFNRSKAKKGTASRRKNASKNSHKGGRIKYVEEEEEEEEEEEEVEEEEEEEEEYKVEEEEEIQEVRNLNRPKAKNGVRSRKRSAGKISPKRGRKIHTEQLEEEEEEEKEEVNEGGDDEEEEGDRDGEDEDFDYVDEDDEFLPEEEDYSDEEEEMRGRKKNNDSMKMVKKVFQKKRSSVVSTRGRKRQSSRASKKPLRKKRRKNARLRKNGKCEDDDEDDFIDNSPTMRTSRRKRGQKRKRVPFSDSENAFSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSFHLINNEEVDVHEEQIQLRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVVDPRVTIQNLPVRPPPALHVRESIDLNMISSPRAAFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISATSSTSNLYSSQIDQSRGTATLHARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLIGTPPVPDCEQVHQFSRSSIVPDDGLSSAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEHKNTEVCNVAPPSACPHMELMVGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01261 863 SMART ring_2 411 452 IPR001841 -
Phco6g01261 863 MobiDBLite consensus disorder prediction 174 222 - -
Phco6g01261 863 SUPERFAMILY FYVE/PHD zinc finger 473 549 IPR011011 -
Phco6g01261 863 CDD RING-HC_Topors 409 456 - -
Phco6g01261 863 SMART PHD_3 503 548 IPR001965 -
Phco6g01261 863 MobiDBLite consensus disorder prediction 79 95 - -
Phco6g01261 863 Pfam PHD-finger 503 549 IPR019787 -
Phco6g01261 863 MobiDBLite consensus disorder prediction 649 672 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 145 162 - -
Phco6g01261 863 ProSitePatterns Zinc finger RING-type signature. 430 439 IPR017907 -
Phco6g01261 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 551 IPR013083 -
Phco6g01261 863 SUPERFAMILY RING/U-box 410 459 - -
Phco6g01261 863 ProSiteProfiles Zinc finger PHD-type profile. 501 550 IPR019787 -
Phco6g01261 863 Coils Coil 333 353 - -
Phco6g01261 863 PANTHER F18C1.6 PROTEIN 173 853 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 369 399 - -
Phco6g01261 863 Coils Coil 99 140 - -
Phco6g01261 863 ProSiteProfiles Zinc finger RING-type profile. 411 453 IPR001841 -
Phco6g01261 863 Pfam Ring finger domain 410 453 IPR001841 -
Phco6g01261 863 MobiDBLite consensus disorder prediction 223 241 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 1 36 - -
Phco6g01261 863 Coils Coil 165 193 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 63 323 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 104 131 - -
Phco6g01261 863 MobiDBLite consensus disorder prediction 250 278 - -
Phco6g01261 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 474 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01261 Phco-Chr6 12693995 12697035 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco6g01261 PHD 4.4e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01261 6 12693995 12697035 Phco6g01261 6 12693995 12697035 ECH