Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01217 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCAGACGGAAAGCAGTGGCGTTGCACGGCCATGTCGATGCCGGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCGAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCCGCTATAAGTCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACGCCCGAGCGTGACGCGCGAAGAACCTCCTCTGCGAGACACGCTCTTGACGAGGTGGATGTGGATGTGGATGTGGATGTGGATGCGGATGCGGATGTGGATGTGGATGTGGATGCGGATGCGGATGCGGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCGCAAAAGATCGCGAAGGAGCTTGGATGCTAATGCCACTACTCAGGAATATTCCGACGGAACTTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACCGAGATAGAGTTACTTGGTGCTTAAGATGTGACAGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCTTGTCGTGGTATTTGTAATTGCAAGACTTGCTTACGGAGTGATAATTCTATCAAGGTTCGGATACGTGAGATACCTGTTCTGGATAAGTTACAGTATCTTCATGTCTTGCTATCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGCAGGATACCTATTACTGATTATCATCGACGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCTGATCGCAATGAAGAACCCCAGACAGAGCTAGCTAAAACTTGTGATCAAAATATATTAAGTAAATTTCCTCAATGGAGATCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGCCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGTTGCAGAATTAGTAACGACTATGGTACTACACCAGAAACCGGGCTGAGTGATCTCAGACTCTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTCTATTGTCCAGCATCTGATGATATCAAAACTGATGGGATTGAAAATTTTAGAAAGCACTGGAAAACTGGTGAGCCAATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGGGGGATTCTAGAGACAACGGATGAGAAAGCGAAAGACGAGAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACCTCGAAGGGCGCGCTCATGAAAATGGTTGGCCACAGTTATTGAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGTGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTTAATATTCGTGACATGGTGTACCTTTTGGTTCATACGAATGAAGTAAAGTTGAAGGACTGGCAGAGAACTAAAATTGAAATTATGCAAAAGGCTAAAACTAATGAGGAATCTGGGGCAAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGGGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTGGTGGACTGGATATGGATTCAAACCAGAATAAGTCAATTATCGATGAAGAATTTGAAATTTATTCTGGTGCTGAAGGTAATATGGTCAATTTTAAAGTCCCATCTACACAAAATGGAGATGTCTCCGAGGAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTGGGGAAGTCAGGTGATGCGGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGAGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGTGATGCTGTAAGATTGACAGAGGAAGTTCGCTGTCTACCAAATGAACATGAATCCAAAGTTCAAGTATTGGAGGTGGGGAAGATATCTCTCTATGCAGCTAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACAAAAAACTTGGCGCCCAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTCAAGCGGAGGCAGATTAGTTGTGCTTGA 2841 0.4407 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRTSSARHALDEVDVDVDVDVDADADVDVDVDADADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTQEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISAWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADRNEEPQTELAKTCDQNILSKFPQWRSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNDYGTTPETGLSDLRLCQCSHREASDDNYLYCPASDDIKTDGIENFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYLEGRAHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKAKTNEESGAKESHGDPQIFSRGSSLDSSLGTKSGGLDMDSNQNKSIIDEEFEIYSGAEGNMVNFKVPSTQNGDVSEETHPGVLWDVFRRQDVPILTKYLKIHWKELGKSGDAGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEVRCLPNEHESKVQVLEVGKISLYAASSAIKEVQKLVLDKKLGAQIGYGDPNLTAMVSENYEKMVKRRQISCA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01217 946 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Phco6g01217 946 MobiDBLite consensus disorder prediction 183 205 - -
Phco6g01217 946 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 201 266 IPR018866 -
Phco6g01217 946 MobiDBLite consensus disorder prediction 1 20 - -
Phco6g01217 946 MobiDBLite consensus disorder prediction 162 208 - -
Phco6g01217 946 MobiDBLite consensus disorder prediction 698 722 - -
Phco6g01217 946 Pfam JmjC domain, hydroxylase 812 855 IPR003347 -
Phco6g01217 946 Pfam WRC 17 57 IPR014977 -
Phco6g01217 946 Gene3D Cupin 467 885 - -
Phco6g01217 946 Coils Coil 56 76 - -
Phco6g01217 946 SMART cupin_9 587 876 IPR003347 -
Phco6g01217 946 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Phco6g01217 946 MobiDBLite consensus disorder prediction 682 722 - -
Phco6g01217 946 SUPERFAMILY Clavaminate synthase-like 485 882 - -
Phco6g01217 946 ProSiteProfiles JmjC domain profile. 580 876 IPR003347 -
Phco6g01217 946 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 912 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01217 Phco-Chr6 12190685 12197062 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco6g01217 JmjC 2e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01217 6 12190685 12197062 Phco6g01217 6 12190685 12197062 ECH