Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01215 ATGTCAAACATCACTAGTTGTGATAGTGGGAGCTTCTCAACAGAGAATACGAGAGAAGATGCAGCAGTTAAACAGAAATCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCTTACTTCAACTACAACAACAAATAATAGCAATGGTTCCAATACAAATTCACAACCACCTGCCCCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTTTATCACCAAACACACTAATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACAGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCCTCGTGTGTCCACCACAACCCTGCAAGAGCACTTGGTGACCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTGGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACAGATTCCAAACCTTGTTTCCTCATTACCAATCAACACCAACATTGTTCCCAACCCACAAATCGGTGGCACATCGGAGTTCAACCATGCTGAAGACAAGCACCCACTATCGCTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACAACACCACCACCATGGCAGGAACAGTGTTCTCAAGAAACCTCTCATCAACCTCTCCACCGTCTCTCCAACTAAGTTCAAATATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCCACACATGTCAGCCACGGCCCTGCTGCAAAAAGCCGCGCAAATGGGAGCTACAGTGACGGATAAAACTTTTACCACAAACATGGCACCGCCATCGTTTGGGGTGCTGCAACAGCAGCCGAATGGACAATCCTTCATGAACCAGTACATGCACAGTGGCCAACAGGATGCTAACGTTAACATCTCCGCTCAGTATAATGGTTTCGGCGCAAATGGGATAAGTGGAGGAAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAATAGAAGCAGTGGTGGAGGAGCAACAAATGGAGGTTCAAGTGCTATTAACGTTGGTGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGACTTTTTGGGAATAGGGGGTGGTGGTGGTGGTGGTAGTGGTGGTGGCGGTGGCGGTGGTGCACATGGAAACTTCTATGGTGGTGCACAACAAGGAGAAAATGGTGCACCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1578 0.4658 MSNITSCDSGSFSTENTREDAAVKQKSEMLGQFHSPHSLTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNIVPNPQIGGTSEFNHAEDKHPLSLPHELMPMPAPKPFNNTTTMAGTVFSRNLSSTSPPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVTDKTFTTNMAPPSFGVLQQQPNGQSFMNQYMHSGQQDANVNISAQYNGFGANGISGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSGGGATNGGSSAINVGGSKGSGDVMTLDFLGIGGGGGGGSGGGGGGGAHGNFYGGAQQGENGAPDEVWRNWSSKNAGFESFSATSSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01215 525 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Phco6g01215 525 Gene3D Classic Zinc Finger 146 225 - -
Phco6g01215 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 486 IPR031140 -
Phco6g01215 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Phco6g01215 525 MobiDBLite consensus disorder prediction 31 60 - -
Phco6g01215 525 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Phco6g01215 525 MobiDBLite consensus disorder prediction 1 75 - -
Phco6g01215 525 Gene3D Classic Zinc Finger 70 137 - -
Phco6g01215 525 MobiDBLite consensus disorder prediction 1 18 - -
Phco6g01215 525 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Phco6g01215 525 MobiDBLite consensus disorder prediction 487 512 - -
Phco6g01215 525 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Phco6g01215 525 SMART c2h2final6 167 187 IPR013087 -
Phco6g01215 525 SMART c2h2final6 132 162 IPR013087 -
Phco6g01215 525 SMART c2h2final6 91 113 IPR013087 -
Phco6g01215 525 FunFam protein indeterminate-domain 12-like 70 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01215 Phco-Chr6 12179218 12182646 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g01215 zf-C2H2_jaz 7.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01215 6 12179218 12182646 Phco2g01780 2 48340210 48343615 PCT