Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01212 ATGGATCAGGAGGAGCAGGATAAAGCGTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAATTCTTCCTCCTAGTGCAAAGATCTCCAAGGAAGGGAAACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTTGTGACTAGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGACCATAGCAAGGTACTTACATAAATACAGGCAAGCTGAAAGGGAGAAAATGAATCACAACAAAAAATATGAAGGATCAGCAACACAAACTCTCAACCGAGATCAACTTATCCTTGCTCCTCCACCACCATCACTCTCTAGGGTTACTGACAAGGTTCAAAACCCTCCTACTACAGATCAATCTGGATGA 438 0.4315 MDQEEQDKALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTSEASDKCHKENRKTVNGDDICWALSSLGFDNYAETIARYLHKYRQAEREKMNHNKKYEGSATQTLNRDQLILAPPPPSLSRVTDKVQNPPTTDQSG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01212 145 SUPERFAMILY Histone-fold 6 111 IPR009072 GO:0046982
Phco6g01212 145 MobiDBLite consensus disorder prediction 130 145 - -
Phco6g01212 145 Coils Coil 78 105 - -
Phco6g01212 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 107 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco6g01212 145 MobiDBLite consensus disorder prediction 98 145 - -
Phco6g01212 145 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Phco6g01212 145 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Phco6g01212 145 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Phco6g01212 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Phco6g01212 145 FunFam Nuclear transcription factor Y subunit B-6 1 114 - -
Phco6g01212 145 Gene3D Histone, subunit A 1 121 IPR009072 GO:0046982
Phco6g01212 145 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01212 Phco-Chr6 12121395 12121832 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco6g01212 CBFD_NFYB_HMF 2e-25 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01212 6 12121395 12121832 Phco6g01212 6 12121395 12121832 ECH