Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01206 ATGATTTATAATGTAGATTGTTTGGCCTTTTGCTTTGCCTTCGTGAGATTTGTCTACACTGAGTCTCCTTATTCCTTGGAATCTCAATCACATTCAAATCCCATTATTCATGTCCCTGAACTATCTGTTTCATACATTACACTGAATTTCACAATGTCATTTTCGCGGCAATGCGTTACTCTTTATCTCTGTCTGTGTAAACCCTGCCACTCCCGTTTTCCTATTCTTCTCTCGTGCTTCAGCGGGACTCGGAACCCTACGAGAGCGGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAGTAAGCGGATTTCAAATTCAAGTGATGTTTCTCCTGAGAAAGATGTTGTTAATTCAAATAAAAACAAGCATCGGAAGAAAAAGTTGACTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAAGGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATATCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAGTGATGCACTAGGACCTCGGAAATTTATAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGACCAGTCTCATTCAATTGCTTCCAGTGAAGGTTGCCTCTCTTTATTGAAGAAGAGACGCTTAGATGGTATTGTGCCTCATGCTGTTGGTAAAAGGACTCCTCGTGTCCCAGTTTCTTATTCTTATAAGAAAGATTACACAGAAAATTATGGTTCACCTTATAGAAGAAGCCTGAAGTCAACTACTGATGTCAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAAAGAGGAGGCTCTCCCCAAGTTTCTCAATCACCACGTAGAAGAGTAGAGCAAAAACCCTCACCTGTACAGCGCTGGGAAAAGAAGCATCAAGTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTCGATGAAGAGTTATTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAGTAGAGAATATGCAAGAGATAATAGTTCATTGATGGATATGGAAGGCACAGGCACAGTTGAAGTTCTTCAGAAGGGGGGTAAATTTTACAGAAAGAGAGAGAGAGTGAAAAATGATGGAAACCATAAGCTTGATGATGGTGGGGAAGCATGTAGCGGTACTGAAGAAGGGCTTAGTTTTAGTTCACTAAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAAATCTCTCCAAAAGGTGGGGGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCAGCCTTGAATGCGTTGCAAACTTTAGCAGATCTGTCTCTAATGATGCCGATATCTACAATAGATTCTGAATCATCCATCCAATTGAAGGGAGACAGAATTTCTGCTGATAAAGATAGTAAGTCTGCTTTACCTGAAGCAACATCAACGAGCCATAAGAGACATAAACTTAAACGCAGTGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGCCCAAGCTTGGAAAGGAATCGGCAAAGGATACCAATGTGCTCTCTGAATCAAAAGAACAACTTCCTTTTGTTGATGCAACATGGAAAAGAAAGCGGAAGTCTATGGTTCCAAAGGTTGCAAATGCAAAGCTTGATTCTTTTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTGGCTAAAGGAAAACATGGTGATCAGGTTTTTATCCTACCAAAGCAATTGAAGACAGTTAAATCATCAGAGAGTTCCTTGTTTAGTGATCAGAAAGATTTGACAGCATCAATGGCAGAAACTCCACTTTTGAACGAAGTTAGTTTACCAACTAGACAAAGTAGACGTAAGATGAATTTACAGAGAACTTCCTTGGCTAAAGAGAAGTCTTCTGATTACATATTGAAAAGTCAACCTAACAAGCACACTGCTGTGAAGGAGAAGCTTTCTAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGCGTTGAGTGGAGTGTTGTAAGAGGTTCCCTTGGCAAACCCCGGCGGCTTTCTGAACATTTTCTTCATGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGGACTGGTATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGACAGAGAGTAATTGCTGTTCATCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACCGTTGATTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAGTTAGGTGTTGAGTTTGTAATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAAAAGCTCTGAGGAGGCACATTGATGACAGAAAAGGCTCGCCTATAGAGCCACATATTAATGGAACTTCAAATTTTGGCGGGTGTGAAAATCATTCCTCACCGGTTAAGGCTATGGTTGCTACTGTCGATAACTTCTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTGACACACCATCAAGCTAAGGAAGCTGATGTACATGCACTTTCTGAACTAAAGCGTGCTCTAGATCGAAAGGAGACATTGTTGATGGAGCTTCGAAGTTCAAATAGCGACATATTGGAAAACCAGAATGGCATAGAATGCGTAAACGATTCTGAGGTTTTCAAGAAGCATTACGCCATGGTACTGGTAGAGCTAAAGGAAGCCAGTGGGCAGGTTTCTGATGCTATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCGCAAACAAGTTTCAATGTTCATGATGATCTTCCCAATGTGTTGGATAGCTCTCTTACACAAGAGTTAGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGTCACATGCAATGGTAGATGCAGCATTTAAGGCATTGTCTTTGACAAAGGAAGGTGAAGATGCTTTCGTGAAAATTGGGCAAGCATTGGATTCTATTAATCCTCAACAGTTGGCCTCGAAGTCTAGGTTACCTCTGATTAGGTCTCAAGAGCAAGTGACTGCAAATGGCAGTTTTTATAATCTTAATCATTCAACTTGCAGTGTATCAGAGTCTATACTTAATTATCCATCTGGTACAAAACTGCATAGTTATTCGGACAAATTTGATACTGAACTTCCGTCGGATCTTATCACTTCTTGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCTGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAGACACAGATTTTAGCTCTCATCCCTACTTGA 3648 0.4095 MIYNVDCLAFCFAFVRFVYTESPYSLESQSHSNPIIHVPELSVSYITLNFTMSFSRQCVTLYLCLCKPCHSRFPILLSCFSGTRNPTRAGSMAPTRKSRSVSKRISNSSDVSPEKDVVNSNKNKHRKKKLTDKLGSQWSKEELEGFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESSDALGPRKFIKRKREKVQLSVSKDQSHSIASSEGCLSLLKKRRLDGIVPHAVGKRTPRVPVSYSYKKDYTENYGSPYRRSLKSTTDVNDDEVAHVVALALTEAAQRGGSPQVSQSPRRRVEQKPSPVQRWEKKHQVSETARAKLHNLSVDEELLDGSIESRGADSREYARDNSSLMDMEGTGTVEVLQKGGKFYRKRERVKNDGNHKLDDGGEACSGTEEGLSFSSLKEMVDIEVTNEKLEKISPKGGGKRNKKLFFGDETPALNALQTLADLSLMMPISTIDSESSIQLKGDRISADKDSKSALPEATSTSHKRHKLKRSVVPEIEVSTSKKPKLGKESAKDTNVLSESKEQLPFVDATWKRKRKSMVPKVANAKLDSFPSGPLKDEALDDEKKPVAKGKHGDQVFILPKQLKTVKSSESSLFSDQKDLTASMAETPLLNEVSLPTRQSRRKMNLQRTSLAKEKSSDYILKSQPNKHTAVKEKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLHDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAVHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPKALRRHIDDRKGSPIEPHINGTSNFGGCENHSSPVKAMVATVDNFCAQAGCVQPCKVTHHQAKEADVHALSELKRALDRKETLLMELRSSNSDILENQNGIECVNDSEVFKKHYAMVLVELKEASGQVSDAMLQLRQRNTYRGNSLPPWMKPQTSFNVHDDLPNVLDSSLTQELGSTVVQIIKGSRSRSHAMVDAAFKALSLTKEGEDAFVKIGQALDSINPQQLASKSRLPLIRSQEQVTANGSFYNLNHSTCSVSESILNYPSGTKLHSYSDKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01206 1215 FunFam Protein ALWAYS EARLY 3 isoform A 94 190 - -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 319 350 - -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 321 336 - -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 546 561 - -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 501 562 - -
Phco6g01206 1215 SMART sant 134 182 IPR001005 -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 87 116 - -
Phco6g01206 1215 Coils Coil 935 955 - -
Phco6g01206 1215 MobiDBLite consensus disorder prediction 87 131 - -
Phco6g01206 1215 SUPERFAMILY Homeodomain-like 132 181 IPR009057 -
Phco6g01206 1215 Gene3D - 82 190 - -
Phco6g01206 1215 SMART DIRP_2 718 819 IPR033471 -
Phco6g01206 1215 ProSiteProfiles SANT domain profile. 133 170 IPR017884 -
Phco6g01206 1215 Pfam DIRP 717 818 IPR033471 -
Phco6g01206 1215 PANTHER LIN-9 92 1215 IPR010561 GO:0006351|GO:0017053
Phco6g01206 1215 Pfam Myb-like DNA-binding domain 136 173 IPR001005 -
Phco6g01206 1215 CDD SANT 138 179 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01206 Phco-Chr6 12029510 12061230 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g01206 DIRP 3.4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01206 6 12029510 12061230 Phco6g01206 6 12029510 12061230 ECH