Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01184 ATGGATCATCAAGGGCATGGTCAGAACCCATCCCTGGGAGTTGTTGGAAGTGGACCTCAACTCACCTATGGTTCTAATCCATACCAGGCCAGCCACATAACAGCCTCACCTGGGATGGTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAACCAGCTGCAACTCAACTAGGACAGCATCAACTTGCTTATCAGCACATGCATCAGCAACAGCAGCAGCAGCTGCAGCAAAGACTTCAAGCCTTTTGGACAAATCAATATCAAGAAATTGAGAAGGTGACTGATTTCAAGAACCACAGTCTTCCCTTGGCAAGGATAAAAAAGATTATGAAGGCCGATGAGGATGTCAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCATGTGAAATGTTCATATTGGAGCTAACCTTGCGTTCTTGGAATCATACAGAAGAGAACAAAAGGAAAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTATAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTATACCTGTTACAGGGGCCCCTGAAGCACTTCCTTACTGCTATATGCCACCTCAACATGCACAAGTTGGAGCTGCGGGTGTCATGATGGGTAATAACCCTGTGATGGATCCTTATGCTCAACAGTCTCATCAATACAGCATGGCACCACAAATGTGGCCACAACCATCAGAGCAACAACAATCATCTCCAGACCATCCAGACCAGTAG 789 0.455 MDHQGHGQNPSLGVVGSGPQLTYGSNPYQASHITASPGMVVASPGTIQSTGQPAATQLGQHQLAYQHMHQQQQQQLQQRLQAFWTNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIFDFLVDIVPREDYKDEVLASMPRGTIPVTGAPEALPYCYMPPQHAQVGAAGVMMGNNPVMDPYAQQSHQYSMAPQMWPQPSEQQQSSPDHPDQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01184 262 SUPERFAMILY Histone-fold 66 173 IPR009072 GO:0046982
Phco6g01184 262 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Phco6g01184 262 MobiDBLite consensus disorder prediction 238 262 - -
Phco6g01184 262 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Phco6g01184 262 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 230 - -
Phco6g01184 262 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01184 Phco-Chr6 11903155 11903943 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco6g01184 CBFD_NFYB_HMF 1.8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01184 6 11903155 11903943 Phco6g01184 6 11903155 11903943 ECH
Phco11g01450 11 11095319 11097399 Phco6g01184 6 11903155 11903943 ECH
Phco11g01450 11 11095319 11097399 Phco6g01184 6 11903155 11903943 PCT