Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01182 ATGGAAGTTAATACTACTACTACAACCACTGTACCTGCAGGGCCACCAACTAAGAACCATTCTTTCACACATCACCGCTTACATTCAGAAAGACATAGCCATAGCCACGGCCATTTCTCCTCCAAAACCATTCTCATAATCATCTCATTGGTTACCTTAGTTACGGTCCTATTTGTCATTTTTTTGGTCCTATTCTTGATGCGTCGCCTAAAATCTTCCACCAAGAATGGAACTTGCAAAGAAGACAGCAGAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCCACGTTGAATTCTAGTCCAGAAATGAAGAGTGGGTGTCTTCACGGAGGAAATTTGAGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAATTAGAAATTGCTACAGGTGGATTCAGTGAAAGAAATGTGATTGGTAGTAATGGAGGGGTTGGGTTGATGTTTAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTCGCTTCGCAGTGAGGGTAAGCAAGGGGAGCGTGCCTTCAGAATGGAGGTCGATCTCCTTAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCAATGGTACACTTCACCACCACCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAAGGCACTGGAATTCCTTCATGAACATGCAGTCTCTCCAGTGATCCACAGAGACTTCAAGAGTATCAACGTTCTAGTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAGGAACGGTCAGATTTCCACCCGTGTGTTGGGGACCACTGGATATCTGGCACCAGAGTATGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTACCTGTTGATATCAAGCGGGCCCCGGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGACCCAGCTCTACGCGGACAGTACTCGAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTGATACCGCTTGTTAGGAACCCATCCCTTAGCTCTATCTCCCTACGATTTCAGAAACAAACGCCCAGTCCAAGTCATTAG 1320 0.4659 MEVNTTTTTTVPAGPPTKNHSFTHHRLHSERHSHSHGHFSSKTILIIISLVTLVTVLFVIFLVLFLMRRLKSSTKNGTCKEDSRELHDTSSRLITSSTLNSSPEMKSGCLHGGNLSRTPAPTFRGVQVFTYRELEIATGGFSERNVIGSNGGVGLMFRGVLSDGTLAAIKSLRSEGKQGERAFRMEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPNGTLHHHLHSPNDQTQPLDWWARMRIALDCAKALEFLHEHAVSPVIHRDFKSINVLVDQNFRAKVSDFGLAKMGSEKRNGQISTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNPSLSSISLRFQKQTPSPSH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01182 439 ProSiteProfiles Protein kinase domain profile. 142 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01182 439 Pfam Protein tyrosine and serine/threonine kinase 154 414 IPR001245 GO:0004672|GO:0006468
Phco6g01182 439 CDD STKc_IRAK 147 417 - -
Phco6g01182 439 FunFam Serine/threonine-protein kinase PBS1 109 217 - -
Phco6g01182 439 MobiDBLite consensus disorder prediction 75 89 - -
Phco6g01182 439 MobiDBLite consensus disorder prediction 90 105 - -
Phco6g01182 439 MobiDBLite consensus disorder prediction 21 35 - -
Phco6g01182 439 FunFam Receptor-like serine/threonine-protein kinase ALE2 218 433 - -
Phco6g01182 439 SUPERFAMILY Protein kinase-like (PK-like) 121 414 IPR011009 -
Phco6g01182 439 MobiDBLite consensus disorder prediction 1 36 - -
Phco6g01182 439 MobiDBLite consensus disorder prediction 75 105 - -
Phco6g01182 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Phco6g01182 439 Gene3D Phosphorylase Kinase; domain 1 114 217 - -
Phco6g01182 439 MobiDBLite consensus disorder prediction 1 17 - -
Phco6g01182 439 Gene3D Transferase(Phosphotransferase) domain 1 218 426 - -
Phco6g01182 439 PANTHER OS07G0668900 PROTEIN 104 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01182 Phco-Chr6 11870054 11872910 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Phco6g01182 PK_Tyr_Ser-Thr 6.1e-41 CL0016