Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01174 ATGTGTTTGCCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTGTTTCCACAATCACAAGACCCATTTGGTGGTTACGGATCAGTGAAGGACTTTTACAACTGCACCTTCTTGGCTGCTACTTCACCCAACTGGGGGGACTGTGAACACATCAACATCAACATCGACAAAGAAGAAGAACAAGGTTCCATCTCTACTTTTCTCGATAATAATAACAACCAACCAGACAATTACCCTTATGGCGGAGATTGGACCAGCTCCTCCTCCTCTATCTTACCCCACTTGAATGAACTTCAAGAAACCACAGACCCCAGTAACAGCACTCAAAACTTGGATAGCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAGGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTCGAGCAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGATGCTGGTGGTGCAACAATCATGCCCTTTTCAGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGCGGTGGTGGCTCTGATAATTCTGCAACCATAGGTGAAGACGGGGGTGAAGTTAAGTATGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAACTCTTGAAGTTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACTGCTGAAGTTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGACTGCAAGTTGGGATCCGTTGATGATATAGCTGAAGCTGTGTACCAGACGCTGGATAGGATTCAGCAAGAGGCAGGGGTGGAGGAGGCTCTGTGGTGGTATATTGTTCTTGAGACATATTCTAGTGCTTGGTCAATTTTGCCCACCTTGCTTTTGAAATTGGTGGGTCTTGTCTACCTCAACTATAAGCCAAAGCCAAATTGTCAAGCTGAAATTGGGAGCATCTGA 1164 0.457 MCLPEGERDRERAMALEAVVFPQSQDPFGGYGSVKDFYNCTFLAATSPNWGDCEHININIDKEEEQGSISTFLDNNNNQPDNYPYGGDWTSSSSSILPHLNELQETTDPSNSTQNLDSLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEGKSDAGGATIMPFSEFFAFPQYSTSGGGGSDNSATIGEDGGEVKYGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTAEVVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAGVEEALWWYIVLETYSSAWSILPTLLLKLVGLVYLNYKPKPNCQAEIGSI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01174 387 Gene3D - 124 204 IPR036638 GO:0046983
Phco6g01174 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 190 IPR011598 GO:0046983
Phco6g01174 387 PANTHER MAX DIMERIZATION, MAD 91 338 - -
Phco6g01174 387 CDD bHLH_AtFAMA_like 142 211 - -
Phco6g01174 387 MobiDBLite consensus disorder prediction 70 91 - -
Phco6g01174 387 SMART finulus 145 196 IPR011598 GO:0046983
Phco6g01174 387 MobiDBLite consensus disorder prediction 104 119 - -
Phco6g01174 387 MobiDBLite consensus disorder prediction 104 135 - -
Phco6g01174 387 Pfam Helix-loop-helix DNA-binding domain 140 191 IPR011598 GO:0046983
Phco6g01174 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01174 Phco-Chr6 11797983 11799660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g01174 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01174 6 11797983 11799660 Phco6g01174 6 11797983 11799660 ECH
Phco11g01444 11 11043653 11049131 Phco6g01174 6 11797983 11799660 PCT