Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01163 ATGGCCAATCCCACGCTAGAACAGTGTTTATGGGACGACGAAAAAGACAATCCGAATAAACCGAAAAGGGTTTCAATTGGTGAAGCTTTACATCTTAAACCCAAAAAAGAACATTTGTCTACCTCATCTTCTGCTCATGACTTGAGGCATTTAGAAGTGGAGAAAGAGAAAGAAAATATTGCATCACCAAGAGGAACCTTAGAAGCATGCATGAATGACTTTGACTCTCCACAATTAGCTAAACCGGAAGCCACTTGTTCAAGCACAAGGGCACACTCTAACTGGACTAATTTTTTCAAACTTCTGAAAAAGAAATCTTTTAAGCGGCTAGGGTCCCTCACCCATTTTATTTCTCCAAAGATACCAAAGTGGAAAAGCAGAAGTAGTAGAGAAAATCACGTTTTAAGTAAGCTATACAACTTCAACTCTTCGTGGGTCACTTTCAACCCTTCTGACCTCAGAAAAGCGACCAACAATTTTGACAGTGAAAATATAATTGGAAGAGGTGGTTTTGCTGATGTTTACAAGGGGTGTCTCCAAGATGGACAGTTAATAGCTGTGAAGAAATTGAATAAAGGAACCACAGAGGAAAAAACCTCGGGCTTTCTATCTGAGCTAGGTGTAATCGCTCATGTTGACCATCGTAATACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCAACTTGTCTTTGAGCTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGAGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTACTCACGGAGAATTTTGAACCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAATTGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTCCTACTTTTGGAGATCATAACCGGGAGACCAGCCGTGAATCATTTGCAGCAAAATATAGTGATATGGGCAAAACCTTTGCTTAACGGCAATCATATCAAGGCCCTTATTGATCCTTCACTTGGTGATGATTATGATCGAGGACAGTTGGGTTGTTTAGTTGTAACTGCATCACTATGTATTGAACAAACTGCTCTCTTACGCCCCAGAATGAGGCAGATTGTCACACTACTAAGAGGTGATAAGCACCTTATGGAATTTCCAAGAGCAAGGGGAAGGAGACCTCTTGAAAGAACATACTCAGAAGAGCTGTTAGATGCGCACGAATACAACTCAACAAAATATCTAACAGAACTCAAGCGGCATCAAGAAATTGCATTGGGTATGGAGAGCTAA 1440 0.3958 MANPTLEQCLWDDEKDNPNKPKRVSIGEALHLKPKKEHLSTSSSAHDLRHLEVEKEKENIASPRGTLEACMNDFDSPQLAKPEATCSSTRAHSNWTNFFKLLKKKSFKRLGSLTHFISPKIPKWKSRSSRENHVLSKLYNFNSSWVTFNPSDLRKATNNFDSENIIGRGGFADVYKGCLQDGQLIAVKKLNKGTTEEKTSGFLSELGVIAHVDHRNTAKLVGCCVEGEMQLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHESCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQLTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRPAVNHLQQNIVIWAKPLLNGNHIKALIDPSLGDDYDRGQLGCLVVTASLCIEQTALLRPRMRQIVTLLRGDKHLMEFPRARGRRPLERTYSEELLDAHEYNSTKYLTELKRHQEIALGMES 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01163 479 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 237 439 - -
Phco6g01163 479 MobiDBLite consensus disorder prediction 9 47 - -
Phco6g01163 479 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 136 235 - -
Phco6g01163 479 ProSiteProfiles Protein kinase domain profile. 160 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01163 479 SMART serkin_6 160 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01163 479 Pfam Protein tyrosine and serine/threonine kinase 163 368 IPR001245 GO:0004672|GO:0006468
Phco6g01163 479 PANTHER OS08G0249100 PROTEIN 44 460 IPR046958 -
Phco6g01163 479 Gene3D Transferase(Phosphotransferase) domain 1 237 436 - -
Phco6g01163 479 SUPERFAMILY Protein kinase-like (PK-like) 148 454 IPR011009 -
Phco6g01163 479 Gene3D Phosphorylase Kinase; domain 1 122 234 - -
Phco6g01163 479 MobiDBLite consensus disorder prediction 1 47 - -
Phco6g01163 479 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524
Phco6g01163 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01163 Phco-Chr6 11734589 11737117 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco6g01163 PK_Tyr_Ser-Thr 4.7e-45 CL0016