Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01149 ATGAGAGTTGGAAGATCTCATCCTCTCTATATTCCTCGTCTCGTCTCGGAGAGAGCTACAAAAGGACCAAACAACATCACCAGACAAACAAACGCAGATCACTTTGACGGCACCCTGAATCGTTCTACCTTTGACCTCCTCCTCAACTCAATTCTTAATTGGATGACCAGTGTGGTGATCAGAAACCCTTACAAAAGCGAGCCATGCCAAGGTAATGAAGCTTGGATTCGAGGAGAGTTAATGGGGTGTGTGATTGGCAGAGAAGTGTCATCGGGAATAATCTCCGAGGTGAAGGAGGAGAAGAGTGTGAGTGTTGAATCCAACAAGAAAGTTGACGAAGTCTCCTCAAGCAGAGCTGAGGAGAACGTGGTAGAGGCTCTGAATGGTGAGAAAGAGAAGGAGAAGGAGAAAGAGAAGGGAAGGGAAGAGAGTGGTGGTGCCGATGGAGTCCGGGGGCCAAAAGGTGACAGAAGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCGCGAAAGGCTGACACATTTGAGAAAATTGATAAGATCGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGCGAAAATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACTCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACATACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTAATAATGAAGGGATACTTAAAATTGCAGACTTCGGCCTTGCATCTTTCTTTGATCCAAACTGCAGGCAACCCATGACTAATCGTGTAGTTACCCTTTGGTACCGCCCTCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTAGGAAACCTATTCTTCCTGGACGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTACTGGAAGAAGTCAAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCAGCTCTGCCCCTTATCGACACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAGTGCCTCAGAAGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCCTGTGATCCTCTTAGTCTTCCAAAATATCCCCCAACAAAGGAAATAGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGGGCTGCAGGCAAAGCTCATGTTGATGGTGCAAAGAAGCACCGGTTGCGTGATCGTGCTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAACGTTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCTCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTGTTCCTTCTGACATCTCTTTGGGTTCAACCTCATACACCTTTCCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCCAGCATTAGTAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAGGGAACCCTCAAGGATAAAGTTAAAGGAAAGAAAATCATAGCCTAG 1998 0.4424 MRVGRSHPLYIPRLVSERATKGPNNITRQTNADHFDGTLNRSTFDLLLNSILNWMTSVVIRNPYKSEPCQGNEAWIRGELMGCVIGREVSSGIISEVKEEKSVSVESNKKVDEVSSSRAEENVVEALNGEKEKEKEKEKGREESGGADGVRGPKGDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRKLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHSRNILHRDIKGSNLLINNEGILKIADFGLASFFDPNCRQPMTNRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLARKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERKSASEALRSEFFTTEPYACDPLSLPKYPPTKEIDAKRRDDEARRSRAAGKAHVDGAKKHRLRDRAAKAAPAPEANAELQSNVDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPSDISLGSTSYTFPKEPFQAWSGPIGNPASISKRKKHTAGDALDLSKPYKGTLKDKVKGKKIIA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01149 665 CDD STKc_CDK9_like 205 489 - -
Phco6g01149 665 MobiDBLite consensus disorder prediction 618 648 - -
Phco6g01149 665 ProSitePatterns Protein kinases ATP-binding region signature. 211 234 IPR017441 GO:0005524
Phco6g01149 665 PANTHER CELL DIVISION PROTEIN KINASE 203 493 - -
Phco6g01149 665 Pfam Protein kinase domain 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01149 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Phco6g01149 665 MobiDBLite consensus disorder prediction 97 177 - -
Phco6g01149 665 Gene3D Transferase(Phosphotransferase) domain 1 288 529 - -
Phco6g01149 665 ProSiteProfiles Protein kinase domain profile. 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01149 665 SUPERFAMILY Protein kinase-like (PK-like) 200 495 IPR011009 -
Phco6g01149 665 MobiDBLite consensus disorder prediction 507 544 - -
Phco6g01149 665 FunFam probable serine/threonine-protein kinase At1g54610 192 287 - -
Phco6g01149 665 Coils Coil 117 137 - -
Phco6g01149 665 SMART serkin_6 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01149 665 Gene3D Phosphorylase Kinase; domain 1 192 287 - -
Phco6g01149 665 MobiDBLite consensus disorder prediction 97 163 - -
Phco6g01149 665 MobiDBLite consensus disorder prediction 499 559 - -
Phco6g01149 665 FunFam probable serine/threonine-protein kinase At1g54610 288 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01149 Phco-Chr6 11581520 11588613 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco6g01149 Pkinase 1.9e-63 CL0016