Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01145 ATGAGTGAGAGGGTGAAGAAGGAAAAGCCAACGGAGAAAAGAGAGAGGATGAAGAACATCTTCAAGAAGCTTCACATAGGTGGCAACCACGATGCTCAGCGATCCAATGAGAATTCGCCACCTGTGCCGTCGCCGTCATGCGCCGCCGATCAGTCTCAAAGCTCTGGCACCACTCCTGCAAGCCCCTCCTCGGCCTCGGCCTCGGCCTCTACCGCCGCGGTTACTCCCGGTGGCGCCGTGAGTCCTGTGGTGAATCGGCAGGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTGCAGCTAGCCCTAGCTATCAGCGCTTCCAATTCGGAGTTCCGCGACGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTGTTGAGTTTAGGAGGTCTTCGAATCGATTCGACGAGGAACAAGGACGACGCGGCGGAGGCGCTGGCGAGACAGTACTGGGAATATAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTATATGGGCCCTATAATGATTCGGTGATGCAAGGAAAGATGCCATCTCAAACGGATCTTGAAGCAAATCCTGGAGGTTCTGAGGTGGTCATTGTTAATAGAACAATTGATCCTGCCCTAGAAGAATTGATACAAATTGCACAATGTATTGCATTAGACTGCCCGGTCACTAGTTTGGCACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTAGTATTATGTTAGCAAGATGGACAGAAACAAGAGAAGAGTTAAGGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTGGCTGACAACATTAATATGCCTTGTAGACTGGTTAAAGGCAGTCATTACACTGGTGTGGAGGATGATGCTGTCAACATTATAAAGTTGGAGGGTGAAAGGGAGTTTTTGGTTGACCTCATGGCTGCTCCAGGGACACTTATACCACTTATGCCAGCTGATATTTTAAGCACCAAGGATAGTAGTGCCTTTAACAAGGCGTTTAATCCCAACAGTTTACCTTCCACCAAGGATACTGACTTTTCTTACTCAAGACCTATCCAACCATCTCATGGTGAAGGTAGTAGTCAAAGTTCTGTGATAAAAGATCATTCACTGCCTTGGAATGGAAAATCATATTTTGAGAAGTCAGAGCCTTCAAACATAGGTTTGAGAAGAGACACTGGTGTTGGTACTTCTAAAATTTCTAATAGAGGGACCCCTAACCAACTGGAGAATTTGCCAGCCTTGTCTGGTACTTCTCTGTACAAAGGGACCCTCGGAATGAATACAATTGGTGATGGGACGAGACTTAATGTCAATGTTGTACCATATACTCAAAACAGCTCCAATGACTCTCGAAACCTTTTTGCAGATCTTAATCCATTCCAAATAAAAGGAATGGGGAAGGCCTCTGTGCTTAACAAACCTGTGGAAAGTAAACTTCTTGAGAATAAAAGTACTAAAAACAGTACTGTTTCTGGTCGGCCCCCATTGCTACTGACAAAGAAGAACCGTCATGCCTTCAATGAAGATCCCAGGAAAACTAATCAGAACCCTAATGAATACAACCCTCCCTTGTTTGTTTCCAATGGTTCTTCTACATCTGAAAATATTGACCTTAGTAGTTCCAAACCATTATATAATTCAAATTTAAATAATGATGTAAATGTTCAAACTTTGGCACATGTTACTGGTTCTGTTTCACCATCTTCTGTACCTGAGCTGAACCAGATTGAGGATCTCAATGCTGGTTTTAACCAGGGGGTTCTGGAAAATTCTCAAAACTTCATGGTAGAGGCAGTTAGAGAATCTGGGAATGCCGAAATCAGACATCATGACTGGAGGATGCATACTTATGACAGATTCATGGGAAGTAATTTGAAACTGAAAGAACCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTGGATCAGATATTGGATGATGTAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTCTTTCTTGGTGAAAGAATTGGTATAGGTTCATATGGTGAGGTATACCATGCTGACATGAATGGCACAGAGGTTGCTGTAAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCATTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGCAGGTTACGGCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCTAATCTCTCAATCATTTCAGAGTATCTACCGAGAGGAAGCTTGTACCGATTACTTCATCGCCCTAATTGTCAGATTGATGAGAAACGAAGAATAAAAATGGCTTTGGACGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTATAATTGTTCACCGAGATTTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGGTTGTCAAGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCAGGAACGCCGGAGTGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAAAAATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTTTAAGGTTGCCGTGGACTGGAATGAATCCTATGCAAGTTGTTGGTGCTGTTGGTTTCCAAAATCGTAGACTTGAAATTCCTAAGGAAGTCGATCCTTTAGTTGGAAGAATAATCTGGGAGTGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCACAACTCACAGTGGCTCTAAAGCCTCTGCAGCGTCTGGTTATCCCATCTCATCAAGACCAGGTAGCTCCATATGTGCCGCAGGAGATTTCTGTAAATTCAACCCCATGA 2907 0.4389 MSERVKKEKPTEKRERMKNIFKKLHIGGNHDAQRSNENSPPVPSPSCAADQSQSSGTTPASPSSASASASTAAVTPGGAVSPVVNRQDFFSSEEEFQVQLALAISASNSEFRDDPEKDQIHAATLLSLGGLRIDSTRNKDDAAEALARQYWEYNVLDYEEKVVDGFYDVYGPYNDSVMQGKMPSQTDLEANPGGSEVVIVNRTIDPALEELIQIAQCIALDCPVTSLAQRLAELVTSHMGGPVKDASIMLARWTETREELRTSLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEGEREFLVDLMAAPGTLIPLMPADILSTKDSSAFNKAFNPNSLPSTKDTDFSYSRPIQPSHGEGSSQSSVIKDHSLPWNGKSYFEKSEPSNIGLRRDTGVGTSKISNRGTPNQLENLPALSGTSLYKGTLGMNTIGDGTRLNVNVVPYTQNSSNDSRNLFADLNPFQIKGMGKASVLNKPVESKLLENKSTKNSTVSGRPPLLLTKKNRHAFNEDPRKTNQNPNEYNPPLFVSNGSSTSENIDLSSSKPLYNSNLNNDVNVQTLAHVTGSVSPSSVPELNQIEDLNAGFNQGVLENSQNFMVEAVRESGNAEIRHHDWRMHTYDRFMGSNLKLKEPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLFLGERIGIGSYGEVYHADMNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRLLHRPNCQIDEKRRIKMALDVARGMNCLHTSTPIIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLEIPKEVDPLVGRIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPYVPQEISVNSTP 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01145 968 MobiDBLite consensus disorder prediction 504 563 - -
Phco6g01145 968 SUPERFAMILY Protein kinase-like (PK-like) 677 958 IPR011009 -
Phco6g01145 968 MobiDBLite consensus disorder prediction 355 390 - -
Phco6g01145 968 MobiDBLite consensus disorder prediction 414 433 - -
Phco6g01145 968 FunFam PAS domain-containing protein tyrosine kinase family protein 765 955 - -
Phco6g01145 968 MobiDBLite consensus disorder prediction 535 563 - -
Phco6g01145 968 CDD STKc_MAP3K-like 693 936 - -
Phco6g01145 968 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Phco6g01145 968 MobiDBLite consensus disorder prediction 31 75 - -
Phco6g01145 968 Gene3D Phosphorylase Kinase; domain 1 680 764 - -
Phco6g01145 968 PRINTS Tyrosine kinase catalytic domain signature 800 818 IPR001245 GO:0004672|GO:0006468
Phco6g01145 968 PRINTS Tyrosine kinase catalytic domain signature 847 857 IPR001245 GO:0004672|GO:0006468
Phco6g01145 968 PRINTS Tyrosine kinase catalytic domain signature 910 932 IPR001245 GO:0004672|GO:0006468
Phco6g01145 968 PRINTS Tyrosine kinase catalytic domain signature 866 888 IPR001245 GO:0004672|GO:0006468
Phco6g01145 968 PRINTS Tyrosine kinase catalytic domain signature 761 774 IPR001245 GO:0004672|GO:0006468
Phco6g01145 968 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 943 - -
Phco6g01145 968 MobiDBLite consensus disorder prediction 407 433 - -
Phco6g01145 968 Gene3D Transferase(Phosphotransferase) domain 1 766 948 - -
Phco6g01145 968 FunFam Serine/threonine-protein kinase isoform 1 678 765 - -
Phco6g01145 968 Pfam Ethylene-responsive protein kinase Le-CTR1 143 336 - -
Phco6g01145 968 MobiDBLite consensus disorder prediction 505 519 - -
Phco6g01145 968 MobiDBLite consensus disorder prediction 1 77 - -
Phco6g01145 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Phco6g01145 968 ProSiteProfiles Protein kinase domain profile. 687 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01145 968 SMART serkin_6 687 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01145 968 MobiDBLite consensus disorder prediction 1 30 - -
Phco6g01145 968 Pfam Protein tyrosine and serine/threonine kinase 689 937 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01145 Phco-Chr6 11545302 11554058 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Phco6g01145 PK_Tyr_Ser-Thr 4.9e-62 CL0016