Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01122 ATGTTCGATGGAGTACCTGAGCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCTCTTCACTTACCTTTCCCTCTCCATGCTTCTGGCACCCCCAATACCTTCTCTTCCAATTTTGATCCCTATAGCCCTTCCCATCAACTGCCACTCCAACCCAACACTTTCTTGCACCCATTCCACCACTCACCCTCTACCCACAAAGATGAAGGCAAGGCAGAAAACACCACTATCCCAATGAACTTCCAAATCCAAAGAGATCAAAGGCAGCAACTACCCCAGCTCATTGATCCCTGGACTAACGACGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCACCGAGAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTGGCAGAGCTTGGATATAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATATTTCAACAACAACATTAATTACGGCAAGAATAATAACAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTACCATCAAGGGGGTGGTGATCATCTTGGGACCGGACAAAAGACTCAGAACCTACAGAAACAAGACAAGATGGACCACCATCCATTGGAAGAAGGGGATTCTGGAAAAGTTGAGTCATCGGTGACGAAACAAAACCACGATGCAGTAGTGGCGAAGAGTCAGGGGCGCAAGAGAAAGAGGCCCAAGAGAAAGAGGCCCGGTAGGTTTGAAATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCGCAGCAAGAGGAGATGCACAACAAGCTCCTCGAGGACATGATGACGAGAGATGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAAATGAACAAGGAGCTTGAGATGATGGCTCGTGAGCAAGCCATTGCAGGTGATAGACAAACCAACATTATTCAAATACTGAACAAATTCTCAGTCACTTCTTCTTCAAACAAGAGCCTCAAGGTAGTAACTATTGGTTCAAACCTAAAAACTCACATTACGCAAAACCCTAATCCTTCACAAAACATCCCACCTATACCTACAACAGAAAACCCTACCTCAAGTCTTGCACAAGACACGTTACAAGTGATTACAAATCCTTCTACTTCTTCCACTTCAGCTCAAGTTCCTCAAACTAACCCTAGCACTTCCTCTCTAAACAGCCAGAATAATATAAATCCGGTAGAGAGAAATTCGGTTTTGAATAAAAGTTTGTCATCAAACGTTGCTGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTAGCACTGATAAACCTGAGGTGCACTAGTGTGAGCAACAGCAACACCAATGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTTGGAGTTAGGATACAGGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAATAAGAAGAGGTCCCTTGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTCTATAATGAAGGAAAACTTGTTCTACAATCCGAAAGGCCAGAAAGCCACATGAATAATCCACCTGAGAATCTGGAGCAAGTGGAACCAGATCAAACACAAGCCGAGTCTTCTTCTCAAGTGGGGTCTGGTGGTTTCAGTGTGCAGCAGCAGGTTGATCATGAAGGTGAGAAAACCTTGATGCAAGTACCCTCATTGGATTTTGATCAGTTTTAA 1776 0.4459 MFDGVPEQFHQFITPRTSLPLHLPFPLHASGTPNTFSSNFDPYSPSHQLPLQPNTFLHPFHHSPSTHKDEGKAENTTIPMNFQIQRDQRQQLPQLIDPWTNDEVLALLRIRSSTESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNYRFLSELEQLYHQGGGDHLGTGQKTQNLQKQDKMDHHPLEEGDSGKVESSVTKQNHDAVVAKSQGRKRKRPKRKRPGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMTRDEEKFTREEAWKKQEMEKMNKELEMMAREQAIAGDRQTNIIQILNKFSVTSSSNKSLKVVTIGSNLKTHITQNPNPSQNIPPIPTTENPTSSLAQDTLQVITNPSTSSTSAQVPQTNPSTSSLNSQNNINPVERNSVLNKSLSSNVAEKDDVGRRWPKDEVLALINLRCTSVSNSNTNEEKEGNKVPLWERISQGMLELGYRRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNEGKLVLQSERPESHMNNPPENLEQVEPDQTQAESSSQVGSGGFSVQQQVDHEGEKTLMQVPSLDFDQF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01122 591 ProSiteProfiles Myb-like domain profile. 431 492 IPR001005 -
Phco6g01122 591 Pfam Myb/SANT-like DNA-binding domain 430 520 IPR044822 -
Phco6g01122 591 Pfam Myb/SANT-like DNA-binding domain 97 175 IPR044822 -
Phco6g01122 591 MobiDBLite consensus disorder prediction 344 368 - -
Phco6g01122 591 FunFam Trihelix transcription factor GT-2 99 155 - -
Phco6g01122 591 CDD GT1 430 499 - -
Phco6g01122 591 PANTHER FI21293P1 66 578 - -
Phco6g01122 591 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Phco6g01122 591 MobiDBLite consensus disorder prediction 380 406 - -
Phco6g01122 591 FunFam Trihelix transcription factor GTL2 432 497 - -
Phco6g01122 591 Gene3D - 99 155 - -
Phco6g01122 591 Gene3D - 432 497 - -
Phco6g01122 591 MobiDBLite consensus disorder prediction 533 576 - -
Phco6g01122 591 MobiDBLite consensus disorder prediction 228 242 - -
Phco6g01122 591 SMART sant 428 494 IPR001005 -
Phco6g01122 591 SMART sant 95 152 IPR001005 -
Phco6g01122 591 MobiDBLite consensus disorder prediction 194 212 - -
Phco6g01122 591 MobiDBLite consensus disorder prediction 179 242 - -
Phco6g01122 591 MobiDBLite consensus disorder prediction 533 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01122 Phco-Chr6 11297610 11299778 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g01122 Myb_DNA-bind_4 1.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01122 6 11297610 11299778 Phco6g01122 6 11297610 11299778 ECH
Phco11g01370 11 10361308 10363452 Phco6g01122 6 11297610 11299778 PCT