Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01115 ATGGATAGGGTGTTCTCAGTTGACGAAATCTCCGATCACTTCTGGCCATCGCCGCCGATCCCCGTCTCCGCCGCCGACGACGCCTCCAAGATGAGCCGCAGCGCTTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCACCATCTCCCCCCTCTCCTTCCTCCGCCACCACCGCCGCTCCTGCCGCCGCCCCCGACGTCGTCTTTGTCGAGATCGATGATCATCCCAAGCCTGCCCCGGCTCCTCCCCAGAACGCTGCCGTTTTGCCCAATACCCCTGCTCCCGTGCCCCTTGACTCCGCTGAGTACCAGGCCTTCCTCAAGAGCAAGCTCAACCTTGCATGCAAAGCTGTCGCCATGACCAGGGCATCTTTGGCTAAATCTCAAGAGCCAATCCCTTTTGTTGATGGTGGATCACAGCCTATCGATCCTTCTCAAGTTGGATCTCAGACTACTTCTAAAGCATCTATCCCTTCTGGAAATGATCCATCTAATTTACAAGACAAAGATACGAATGTACCAGTTGGGATGCCTTCCATACCTTCCATGCAAAAGAAACCTGTTGTTGCAATTAGGCCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGAGGATGCTGAGGGAGAGACATCTATGAATGACATGGACCCTGCTGATGCAAAAAGAGTAAGGAGGATGCTATCCAATAGGGAGTCTGCCCGGCGCTCTAGAAGGAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAACTCTACCTTGTTGAAGCGCCTTACTGATGTAAGTCAGAAGTACAGTGAATCTGCCGTTGACAACAGAGTTTTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACTGGATTGAACCCAATGGTTCATGCCATGGCTGACATGTCATCATTGGGCATGCCATTATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCAGCCGTTCCTGTGCAAGATGATCATCATCACTTCTATCAACCCACATCTAATAATCCTATTCCCAGTCATGATCCGACAGTGAACGATGGGTTGGGGGGCATATCTTCAATTGAAAATGTGCAGCAGAACTCTACAGCAGTGGTAGGTGGGAACAAGATGGGTCAAACTACTTCCCTGCAGCGGGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCCTGTGGACCTCCCTCTAATGGGAAGCAGTAG 1284 0.5016 MDRVFSVDEISDHFWPSPPIPVSAADDASKMSRSASEWAFQRFLQEASAPSPPSPSSATTAAPAAAPDVVFVEIDDHPKPAPAPPQNAAVLPNTPAPVPLDSAEYQAFLKSKLNLACKAVAMTRASLAKSQEPIPFVDGGSQPIDPSQVGSQTTSKASIPSGNDPSNLQDKDTNVPVGMPSIPSMQKKPVVAIRPSTSGSSRELSDDEDAEGETSMNDMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMVHAMADMSSLGMPLFDGRSPSDTSADAAVPVQDDHHHFYQPTSNNPIPSHDPTVNDGLGGISSIENVQQNSTAVVGGNKMGQTTSLQRVASLEHLQKRIRGGVDSCGPPSNGKQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01115 427 MobiDBLite consensus disorder prediction 144 174 - -
Phco6g01115 427 Coils Coil 241 268 - -
Phco6g01115 427 MobiDBLite consensus disorder prediction 133 225 - -
Phco6g01115 427 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 228 243 IPR004827 GO:0003700|GO:0006355
Phco6g01115 427 Coils Coil 283 303 - -
Phco6g01115 427 CDD bZIP_plant_GBF1 226 277 IPR045314 GO:0003700|GO:0006355
Phco6g01115 427 Gene3D - 224 280 - -
Phco6g01115 427 SMART brlzneu 221 285 IPR004827 GO:0003700|GO:0006355
Phco6g01115 427 Pfam bZIP transcription factor 224 277 IPR004827 GO:0003700|GO:0006355
Phco6g01115 427 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 278 IPR004827 GO:0003700|GO:0006355
Phco6g01115 427 MobiDBLite consensus disorder prediction 46 97 - -
Phco6g01115 427 MobiDBLite consensus disorder prediction 78 92 - -
Phco6g01115 427 PANTHER BASIC LEUCINE ZIPPER 63 1 417 - -
Phco6g01115 427 Pfam Basic leucine-zipper C terminal 292 416 IPR020983 -
Phco6g01115 427 MobiDBLite consensus disorder prediction 46 61 - -
Phco6g01115 427 FunFam BZIP transcription factor 223 274 - -
Phco6g01115 427 SUPERFAMILY Leucine zipper domain 225 275 IPR046347 GO:0003700|GO:0006355
Phco6g01115 427 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01115 Phco-Chr6 11202546 11209354 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco6g01115 bZIP_C 1.7e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01115 6 11202546 11209354 Phco6g01115 6 11202546 11209354 ECH
Phco11g01356 11 10259314 10262221 Phco6g01115 6 11202546 11209354 PCT