Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01114 ATGGCAGGTAATAGTAGCTCGGAGGGGTTAGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCTCCGGTGGGATATGGCAGAACCGTAGCCACTGACGTTGGAATGCTGCAATTAGGGTCCACAAATTCAACTGCTTCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCATGAATTTGGAGCAATCTGCTTTTCTAAGCCACCATGATTCCAGAAACTTAGTTGACGACGTTGTTAATGTTGATCCCACCGTTCACAATAATCACCACCACCACCACCATCATCAACACCTCACTCTCCATAATAACAACTCATCACCCTCTTCTACTGCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACGCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCGCCTCCTCAGCCCCAGCTCCACCTCCACCACCACCACCACCATAATCAACAGGCGTTTCAGGGCCAGGGAGGTGGAGGTCCAGCGTTAATGAGTGGCACCCCACAAGCACCTATCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCAACAGATCCACACAGTATTGCTGAACGGTTGCGCCGCGAAAGAATTGCTGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATTAATAAGACGGACAGAGCAGCGATGCTCGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCGGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTCATCAAGCCTGAATCAAACAGCCACTGA 1071 0.4995 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTNSTASALRGGGMMPLGMNLEQSAFLSHHDSRNLVDDVVNVDPTVHNNHHHHHHHQHLTLHNNNSSPSSTAPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPQPQLHLHHHHHHNQQAFQGQGGGGPALMSGTPQAPIIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01114 356 FunFam Basic helix-loop-helix transcription factor 195 257 - -
Phco6g01114 356 SMART finulus 206 255 IPR011598 GO:0046983
Phco6g01114 356 MobiDBLite consensus disorder prediction 87 118 - -
Phco6g01114 356 MobiDBLite consensus disorder prediction 103 118 - -
Phco6g01114 356 Pfam Helix-loop-helix DNA-binding domain 205 249 IPR011598 GO:0046983
Phco6g01114 356 MobiDBLite consensus disorder prediction 139 185 - -
Phco6g01114 356 Gene3D - 195 257 IPR036638 GO:0046983
Phco6g01114 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 259 IPR036638 GO:0046983
Phco6g01114 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Phco6g01114 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01114 Phco-Chr6 11190987 11194577 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g01114 HLH 3.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01114 6 11190987 11194577 Phco6g01114 6 11190987 11194577 ECH