Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01089 ATGGCACCCAATAAAAGAGTGGTAGCGGCCTATCGTGCAATGGGAAGTCTTGGAATTGATGAATCGAAAGTGAAATCAGCGTTAAAGAAACTCCTGAAAGTGTTTGATAAAAACTGGGAACTTATCGAGGCAGAGAACTATAGAGTTCTAGCAGATGCTATATTTGAGGAGGACGATAATATGGTGACCGAACTGAAAAAGAAAATCCAGTCTGACGATGTACACAGCACTCGTCATTCTTTGCCTTCCTTTTCAAACAACCAGGAAGATGAGACAGAGAGTGAAGAGGCTCAGATGCATATTGAAAGAGCGCTACCTTTAAAAAGGCTGCGATTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCTGACTAACAGTGCCACCAGCCCTCCTTCAAAAAGGCCTAAATTAGAAGATAATGCATTACACCAGGGTTCTTCTGGGAAGAAACCTCAAAACAAACCAGAGTCATCTGATGGGAACACAAGGATTGAAGCACCGTCACTTCAACTACCAGATGACATTGTTGACAAGGGAAAGCAGCCTGCATCAACCCAAGTTTTGCAAAGAGGAAGAAAGCTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACCAACAGTTGAAGCAGGGAAGTTTCTGTTGCCAAACAACATGATGCCTCGTACTCAGGCTCTTATCATACCCAAGAATGAGCCTATTGATGAAGTGCCTGATTACGAAATGCCCATTGCAGTGATTCCTCCTGAACCAAGCGGAAGGGACTCGTCATTGAAGAATGGTGTAGCTGGAAAGCATGTTAGCCATGTTACTGTTACATCATCAGAATGCAGAGATGGAGTCAGAGATGAAGATGCTAGTCCTACCTCAAATGAAGAAGCCACTTGTAATATAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTATCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAAATTTCACATGCCTAGACCAGATGAAATTATAGAAATGATGGAGGAGAAATGCCTGTTTTCATATAAAATCGCTGACCCAAATTTCTCTGTTATGAAACTGTTGAGGGATCTATGCGATTGCATGTTGGAATTCAGAAGCAATCCTAATAATGATCCAGAAGAAGGTTCTATACTAAGATCTAATGTTGATGTGTCGAAGGAATCACAGGAACCTGGCACACTGGATGTGGTAAGAAACAAAGATTTGGACATGCTTTCTGATGTTTCAAATGGACCCATCAATGTTAGTCCTTCTGCTGCAGTGGCTTCTCCCCGAAGTTTCCTTCTTCTTGCTGACCTGAATGGTGTGAATGATGCTGTCTTGGATCCCAAGATGGACCAAACAACAAATGATTTTTCACAATGTAATGTCAGGAAGGAGCTGGAATGTCCTATGTCTCCCAATTCACATAGTTTAGTGATTGTTCCACAGGATCAGCTAACTGTTGATGATAGTGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAATGATTTCCTGCCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCACGTGTTGGCAGTGAGGACTGTTGTTCAACGTGTGCGGGAAATTGTGTCTTGTCTGTACCCTGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCATATGGTTCTCGAGGCCTACTGAAGGAACAATTCTTGGAAAGTTGCATTGCCATTAGTCGCAATCCTCAAAAACATTTCTTTTATTGTAAAAATTGTCCACTTGAAAGAATTAAGAATGATGGTGGTTTAGAACCTTGTAAAGGACACTTAAAAAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGAAATCGGGTTATCCAGCGAGGAATGACTTGCAAATTTCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGAACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTCGGAGAAATTTTATCCATTAAAGAGTTGCACGAGAGGAACATGAAATGCACTGGAAAAGGGAAACATACATACCCAGTATTACTGGATGCAAATTGGGATTCAGGACATGTGAATAACAAAGAAGCTCTATGCTTGGATGCAGCTTCGTTTGGCAACATTGCTAGGTTCATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGATCCTGGCCATTATTACTATCATTTTGCTTTTTTCACTTCTAGAAAAATATCAGCACATGAGGAGCTAACATGGGATTATGGCATTGACTTTGATGATCATGATCATCCTATCACGCTGTTCCAGTGCAGTTGTGGCAGTAAATTCTGCAGGCATATGAAGAGGTCAAACATCTATTTCATGTTTCAGCGCCATAAGCCAGCCTATAATGATAATTATAAAATATGGAGCTCCTTTCTGTTTTGGTCTGGGGTTTTGTTGGATAGTTGCTATTCTTCATTCTGCACATCTGTATCTGATCTTGGTCATTTAATATGGAACCATATTATAATTTTCAAAATCTGGAACAAGTTTAGTTTCCTGATATGA 2616 0.4079 MAPNKRVVAAYRAMGSLGIDESKVKSALKKLLKVFDKNWELIEAENYRVLADAIFEEDDNMVTELKKKIQSDDVHSTRHSLPSFSNNQEDETESEEAQMHIERALPLKRLRLRGQESQPLHPLTNSATSPPSKRPKLEDNALHQGSSGKKPQNKPESSDGNTRIEAPSLQLPDDIVDKGKQPASTQVLQRGRKLTSGRSSPSTPSKEPTVEAGKFLLPNNMMPRTQALIIPKNEPIDEVPDYEMPIAVIPPEPSGRDSSLKNGVAGKHVSHVTVTSSECRDGVRDEDASPTSNEEATCNIEIASSTLGEVKLSLSCSSALWGSKFHMPRPDEIIEMMEEKCLFSYKIADPNFSVMKLLRDLCDCMLEFRSNPNNDPEEGSILRSNVDVSKESQEPGTLDVVRNKDLDMLSDVSNGPINVSPSAAVASPRSFLLLADLNGVNDAVLDPKMDQTTNDFSQCNVRKELECPMSPNSHSLVIVPQDQLTVDDSDLTKGEENVEIPWVNEYTNDFLPSFNYIPQNLVFQDAYVNISLSRVGSEDCCSTCAGNCVLSVPCACANKTGGEFAYGSRGLLKEQFLESCIAISRNPQKHFFYCKNCPLERIKNDGGLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGMTCKFQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERNMKCTGKGKHTYPVLLDANWDSGHVNNKEALCLDAASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTSRKISAHEELTWDYGIDFDDHDHPITLFQCSCGSKFCRHMKRSNIYFMFQRHKPAYNDNYKIWSSFLFWSGVLLDSCYSSFCTSVSDLGHLIWNHIIIFKIWNKFSFLI 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01089 871 SUPERFAMILY SET domain 479 783 IPR046341 -
Phco6g01089 871 Gene3D SET domain 475 787 IPR046341 -
Phco6g01089 871 ProSiteProfiles Pre-SET domain profile. 540 641 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g01089 871 SMART set_7 644 783 IPR001214 GO:0005515
Phco6g01089 871 Pfam SET domain 656 777 IPR001214 GO:0005515
Phco6g01089 871 MobiDBLite consensus disorder prediction 275 295 - -
Phco6g01089 871 CDD SET_SETDB-like 512 777 - -
Phco6g01089 871 MobiDBLite consensus disorder prediction 68 98 - -
Phco6g01089 871 MobiDBLite consensus disorder prediction 182 207 - -
Phco6g01089 871 ProSiteProfiles SET domain profile. 644 777 IPR001214 GO:0005515
Phco6g01089 871 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 806 - -
Phco6g01089 871 MobiDBLite consensus disorder prediction 116 211 - -
Phco6g01089 871 MobiDBLite consensus disorder prediction 118 133 - -
Phco6g01089 871 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 -
Phco6g01089 871 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 834 IPR025776 -
Phco6g01089 871 SMART preset_2 488 628 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g01089 871 MobiDBLite consensus disorder prediction 145 165 - -
Phco6g01089 871 Pfam Pre-SET motif 492 636 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g01089 871 Gene3D - 1 60 IPR043017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01089 Phco-Chr6 10979817 10984854 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco6g01089 Pre-SET 2.6e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01089 6 10979817 10984854 Phco6g01089 6 10979817 10984854 ECH
Phco11g01327 11 10031416 10032008 Phco6g01089 6 10979817 10984854 PCT
Phco6g01089 6 10979817 10984854 Phco2g01891 2 49521104 49526210 PCT