Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01085 ATGCAGGTGCAGGAAGCGCAGAGAGTCCACGCTATCGAGATTGTCGACACGCGACGCACTCGTTTCGTTGATCACCGTTCACCTGCCGGTGACGGAATTCAAAAACACCCGCCTCTCTCTCTCTCTGACCAGAATCTGTTCCATTCATCTTCTCTGGTTTTGATTCCAATTCGCTGGGGTAAGAATTCGATACACCGTTTTCGTAGTCGTGCAGGGGAATTTCGGGTCTGTTTTGGGTATCAAAAATCAAGTCGAGTGGTATTTTGCTGGAAAATAATGGAAGCACATCCTACTTTTTCCATTGAAAGATCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAGTCCTTCCAATACCCTCAGAAGATATGTATCTCAGGCTGCCTGAATCACAGTTGGATATAGTAGAACAAGACCTCGTGACAAGACCTTTTACTCATTCAAGTTATTTGAATTCCAGTGGAGTAGTTGGGCATATTTTTTCGTCTTCCCCTGGATATTCAACTGATCTTCATCACTCATCTCTTTCCCCCGATGAAAAACACTCTACTAATACTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTCCCATTATCATACTCTTCAAATACTGGACCACCAACTTCAGCAACACCAAGCCACTTTTCCAAAGGAAACAGTGCTTCCTGGCATACAGGTTCCCTGCAGAATTTTCCAGATTTTCCTGCACATGATTCAATTGATGATAATAGGGTAGAAAGTAGTGCCTGCCCTATAATGGCATCCGAGGAGTATGGTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTTACTGACAACATTCAAGACATTGAGCCCAAGGTGCCATTCCAGGTTGCAAAACCACTTTCCCAGTTTCCAGGACATCAATGCCAAGGTCAACAACAACTTCCTGCTTCATATGGAGACAATTGCGCTGGCCTCTCTTGCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAGCTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGGCCGGAGTCATCTGAAGGAGTTACGGAGAAAAAAGCAAGTTCCATTGAGGAGATGTCATCTCTAGATTTAAAAACTGGTATCGAGATTACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGCTCCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAATCTGGAACGGAAACGTTGAAGGCATCATCATCTACCATTGAGACTCAATCTGGAGTATCTTCAAATGCCACGAGAGATTTCCAGGTCAAAAGTGTTTTGGAAGCATCACAGGTGGACCATTGTAGGTCAGGACCTGATCAAGCTAACGGCAGTACCCCAGTTGAGGAAGGCTCACTGGAAAAGGGTGGGAATCCTGATTCTCGCAAAACTCAACATGCTATTGCTAGTGGTGATAGTGCACAGGCCCCAAAACGTCAAAGAACAGAGTAA 1710 0.4421 MQVQEAQRVHAIEIVDTRRTRFVDHRSPAGDGIQKHPPLSLSDQNLFHSSSLVLIPIRWGKNSIHRFRSRAGEFRVCFGYQKSSRVVFCWKIMEAHPTFSIERSKQLNNMGMSGALSSSLSVLPIPSEDMYLRLPESQLDIVEQDLVTRPFTHSSYLNSSGVVGHIFSSSPGYSTDLHHSSLSPDEKHSTNTHFISQSSTNIAQFPLSYSSNTGPPTSATPSHFSKGNSASWHTGSLQNFPDFPAHDSIDDNRVESSACPIMASEEYGKQNDWQEWAERLISDDDTLTSNWDDLLTDNIQDIEPKVPFQVAKPLSQFPGHQCQGQQQLPASYGDNCAGLSCSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVTEKKASSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGTETLKASSSTIETQSGVSSNATRDFQVKSVLEASQVDHCRSGPDQANGSTPVEEGSLEKGGNPDSRKTQHAIASGDSAQAPKRQRTE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01085 569 Coils Coil 437 457 - -
Phco6g01085 569 Pfam Myb-like DNA-binding domain 351 402 IPR001005 -
Phco6g01085 569 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 326 539 IPR044848 GO:0003700
Phco6g01085 569 Pfam MYB-CC type transfactor, LHEQLE motif 434 481 IPR025756 -
Phco6g01085 569 FunFam Myb family transcription factor 348 406 - -
Phco6g01085 569 Gene3D - 348 407 - -
Phco6g01085 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 346 406 IPR017930 -
Phco6g01085 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 349 403 IPR006447 GO:0003677
Phco6g01085 569 MobiDBLite consensus disorder prediction 549 563 - -
Phco6g01085 569 MobiDBLite consensus disorder prediction 520 569 - -
Phco6g01085 569 MobiDBLite consensus disorder prediction 206 228 - -
Phco6g01085 569 SUPERFAMILY Homeodomain-like 346 403 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01085 Phco-Chr6 10944560 10953965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco6g01085 Myb_DNA-binding 1.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01085 6 10944560 10953965 Phco6g01085 6 10944560 10953965 ECH
Phco2g01887 2 49498842 49511148 Phco6g01085 6 10944560 10953965 ECH
Phco2g01887 2 49498842 49511148 Phco6g01085 6 10944560 10953965 PCT
Phco11g01324 11 10015814 10019326 Phco6g01085 6 10944560 10953965 PCT